Planarian EST Database


Dr_sW_028_P03

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_P03
         (253 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24051|RS27L_RAT  40S ribosomal protein S27-like protein ...   112   3e-25
sp|Q71TY3|RS27_RAT  40S ribosomal protein S27 >gi|51316667|s...   112   3e-25
sp|P47904|RS27_XENLA  40S ribosomal protein S27                   112   3e-25
sp|P55833|RS27_HOMAM  40S ribosomal protein S27                   108   4e-24
sp|Q96564|RS27_HORVU  40S ribosomal protein S27 (Manganese e...   102   4e-22
sp|Q8L953|RS27D_ARATH  40S ribosomal protein S27-4                101   5e-22
sp|O74330|RS27_SCHPO  40S ribosomal protein S27                   101   5e-22
sp|O64650|RS27A_ARATH  40S ribosomal protein S27-1                 99   3e-21
sp|Q9M2F1|RS27B_ARATH  40S ribosomal protein S27-2                 99   4e-21
sp|P47903|RS27_CHLRE  40S ribosomal protein S27                    93   2e-19
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein
 sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein
 sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein
          Length = 84

 Score =  112 bits (280), Expect = 3e-25
 Identities = 49/62 (79%), Positives = 55/62 (88%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+  LCQPTGGKARL EGCSFR+K
Sbjct: 23  RLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

Query: 221 QN 226
           Q+
Sbjct: 83  QH 84
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27
 sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27
 sp|P42677|RS27_HUMAN 40S ribosomal protein S27 (Metallopan-stimulin 1) (MPS-1)
          Length = 84

 Score =  112 bits (280), Expect = 3e-25
 Identities = 49/62 (79%), Positives = 55/62 (88%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+  LCQPTGGKARL EGCSFR+K
Sbjct: 23  RLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

Query: 221 QN 226
           Q+
Sbjct: 83  QH 84
>sp|P47904|RS27_XENLA 40S ribosomal protein S27
          Length = 84

 Score =  112 bits (280), Expect = 3e-25
 Identities = 49/62 (79%), Positives = 55/62 (88%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+  LCQPTGGKARL EGCSFR+K
Sbjct: 23  RLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

Query: 221 QN 226
           Q+
Sbjct: 83  QH 84
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27
          Length = 84

 Score =  108 bits (270), Expect = 4e-24
 Identities = 47/62 (75%), Positives = 52/62 (83%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV  PNSYFMDVKCPGC KI+T+FSHA +VV C GC   LCQPTGGKA+L +GCSFRKK
Sbjct: 23  RLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKK 82

Query: 221 QN 226
           QN
Sbjct: 83  QN 84
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese efficiency related protein 1)
          Length = 86

 Score =  102 bits (253), Expect = 4e-22
 Identities = 44/60 (73%), Positives = 50/60 (83%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNS+FMDVKC GC  ITT+FSH+ +VV+C GC   LCQPTGGKARL EGCSFR+K
Sbjct: 25  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRK 84
>sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4
          Length = 84

 Score =  101 bits (252), Expect = 5e-22
 Identities = 44/60 (73%), Positives = 49/60 (81%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNS+FMDVKC GC  ITT+FSH+ +VV+C  C   LCQPTGGKARL EGCSFRKK
Sbjct: 25  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
          Length = 83

 Score =  101 bits (252), Expect = 5e-22
 Identities = 43/60 (71%), Positives = 49/60 (81%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           +LV  P S+FMDVKCPGC  ITT+FSHA +VV+C  C   LCQPTGGKARLMEGCSFR+K
Sbjct: 23  QLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82
>sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1
          Length = 84

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 43/60 (71%), Positives = 48/60 (80%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNS+FMDVKC GC  ITT+FSH+ +VVMC  C   LC PTGGKA+L EGCSFRKK
Sbjct: 25  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84
>sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2
          Length = 86

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNS+FMDVKC GC  ITT+FSH+ +VV+C  C   LCQPTGGKA+L EGCSFR+K
Sbjct: 25  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRK 84
>sp|P47903|RS27_CHLRE 40S ribosomal protein S27
          Length = 86

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 40/62 (64%), Positives = 47/62 (75%)
 Frame = +2

Query: 41  RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 220
           RLV SPNS+FMDVKC GC  ITT+FSH+ +VVMC  C+  LC PTG   RL EGCSFR+K
Sbjct: 25  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRK 84

Query: 221 QN 226
            +
Sbjct: 85  SD 86
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,546,699
Number of Sequences: 369166
Number of extensions: 464292
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)