Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O17
(697 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80TB7|ZSWM6_MOUSE Zinc finger SWIM domain containing pr... 104 2e-22
sp|Q9HCJ5|ZSWM6_HUMAN Zinc finger SWIM domain containing pr... 104 3e-22
sp|Q9H7M6|ZSWM4_HUMAN Zinc finger SWIM domain containing pr... 102 1e-21
sp|Q8C7B8|ZSWM4_MOUSE Zinc finger SWIM domain containing pr... 100 3e-21
sp|Q80TC6|ZSWM5_MOUSE Zinc finger SWIM domain containing pr... 97 4e-20
sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain containing pr... 97 4e-20
sp|Q8IX15|HOMEZ_HUMAN Homeobox-leucine zipper protein Homez... 32 2.1
sp|P17736|HIS8_HALVO Histidinol-phosphate aminotransferase ... 30 6.1
sp|P41250|SYG_HUMAN Glycyl-tRNA synthetase (Glycine--tRNA l... 30 8.0
sp|Q5RBL1|SYG_PONPY Glycyl-tRNA synthetase (Glycine--tRNA l... 30 8.0
>sp|Q80TB7|ZSWM6_MOUSE Zinc finger SWIM domain containing protein 6
Length = 1017
Score = 104 bits (260), Expect = 2e-22
Identities = 67/197 (34%), Positives = 100/197 (50%)
Frame = +1
Query: 61 EMVQWLISCAVPVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPGLSRVIVESHSHH 240
EMV+WL++CA VG + ++ +W TP EA VA+T++ + IV H
Sbjct: 718 EMVRWLVTCATEVGVYALDSIMQSWFTLFTPTEATSIVATTVMS-----NSTIVRLH--- 769
Query: 241 SSNGQISVTQDERVRREVRKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAAE 420
+ Q E++ R +AL+ A KDP +C + AL+L EKD FE YQ + DAA
Sbjct: 770 -----LDCHQQEKLASSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAAT 824
Query: 421 RGAIGPAELFSLGRYLEPRSNRRKAYALALFAINYLQPVEVQDVCPVATDHDISWHACLL 600
G + +LF++ RY+E R +AY LA A+ +L QD P +D+ W L
Sbjct: 825 TG-MSYTQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAI--NDVLWACALS 881
Query: 601 IVLYRSRIDMISQLVRK 651
L ++ + I LV K
Sbjct: 882 HSLGKNELAAIIPLVVK 898
>sp|Q9HCJ5|ZSWM6_HUMAN Zinc finger SWIM domain containing protein 6
Length = 743
Score = 104 bits (259), Expect = 3e-22
Identities = 67/197 (34%), Positives = 99/197 (50%)
Frame = +1
Query: 61 EMVQWLISCAVPVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPGLSRVIVESHSHH 240
EMV+WL++CA VG + ++ W TP EA VA+T++ + IV H
Sbjct: 444 EMVRWLVTCATEVGVYALDSIMQTWFTLFTPTEATSIVATTVMS-----NSTIVRLH--- 495
Query: 241 SSNGQISVTQDERVRREVRKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAAE 420
+ Q E++ R +AL+ A KDP +C + AL+L EKD FE YQ + DAA
Sbjct: 496 -----LDCHQQEKLASSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAAT 550
Query: 421 RGAIGPAELFSLGRYLEPRSNRRKAYALALFAINYLQPVEVQDVCPVATDHDISWHACLL 600
G + +LF++ RY+E R +AY LA A+ +L QD P +D+ W L
Sbjct: 551 TG-MSYTQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAI--NDVLWACALS 607
Query: 601 IVLYRSRIDMISQLVRK 651
L ++ + I LV K
Sbjct: 608 HSLGKNELAAIIPLVVK 624
>sp|Q9H7M6|ZSWM4_HUMAN Zinc finger SWIM domain containing protein 4
Length = 989
Score = 102 bits (253), Expect = 1e-21
Identities = 70/196 (35%), Positives = 99/196 (50%), Gaps = 1/196 (0%)
Frame = +1
Query: 61 EMVQWLISCAVPVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPG-LSRVIVESHSH 237
EMV+WL+SCA +G + +++ NW TP EA VA T G T L R+
Sbjct: 691 EMVRWLVSCATEIGPQALMNIMQNWYSLFTPVEAATIVAVT--GTTHATLLRL------- 741
Query: 238 HSSNGQISVTQDERVRREVRKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAA 417
Q+ ++ E + R +AL+ A KDP +C + AL+L EK+ FEA YQ + DAA
Sbjct: 742 -----QLDTSRREELWACARTLALQCAMKDPQNCALPALTLCEKNHSAFEAAYQIVLDAA 796
Query: 418 ERGAIGPAELFSLGRYLEPRSNRRKAYALALFAINYLQPVEVQDVCPVATDHDISWHACL 597
G +G A LF++ RY+E R +AY LA A+ L QD P +D+ W L
Sbjct: 797 -AGGLGHAHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDSHPAV--NDVLWACSL 853
Query: 598 LIVLYRSRIDMISQLV 645
L R + I L+
Sbjct: 854 SHSLGRHELSAIVPLI 869
>sp|Q8C7B8|ZSWM4_MOUSE Zinc finger SWIM domain containing protein 4
Length = 1101
Score = 100 bits (250), Expect = 3e-21
Identities = 71/196 (36%), Positives = 97/196 (49%), Gaps = 1/196 (0%)
Frame = +1
Query: 61 EMVQWLISCAVPVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPG-LSRVIVESHSH 237
EMV+WL+SCA +G + ++ NW TP EAV VA T G T L R+
Sbjct: 803 EMVRWLVSCATEIGPPALMSIMKNWYSLFTPVEAVTIVAVT--GTTHATLLRL------- 853
Query: 238 HSSNGQISVTQDERVRREVRKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAA 417
Q+ E + R +AL+ A KDP +C + AL+L EK+ FEA YQ + DAA
Sbjct: 854 -----QLDTAGREELWACARTLALQCAMKDPQNCALPALTLCEKNHAAFEAAYQIVLDAA 908
Query: 418 ERGAIGPAELFSLGRYLEPRSNRRKAYALALFAINYLQPVEVQDVCPVATDHDISWHACL 597
G +G A LF++ RY+E R +AY LA A+ L QD P +D+ W L
Sbjct: 909 -AGGLGHAHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDSHPAV--NDVLWACSL 965
Query: 598 LIVLYRSRIDMISQLV 645
L R + I L+
Sbjct: 966 SHSLGRHELSAIVPLI 981
>sp|Q80TC6|ZSWM5_MOUSE Zinc finger SWIM domain containing protein 5
Length = 1188
Score = 97.1 bits (240), Expect = 4e-20
Identities = 65/197 (32%), Positives = 97/197 (49%)
Frame = +1
Query: 61 EMVQWLISCAVPVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPGLSRVIVESHSHH 240
EMV+WL++CA VG + ++ +W TP EA VA+T + T L
Sbjct: 889 EMVRWLVTCATEVGVRALVSILQSWYTLFTPTEATSIVAATAVSHTTILRL--------- 939
Query: 241 SSNGQISVTQDERVRREVRKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAAE 420
+ Q E + R +AL+ A KDP C + AL+L EKD FEA YQ DAA
Sbjct: 940 ----SLDYPQREELASCARTLALQCAMKDPQSCALSALTLCEKDHIAFEAAYQIAIDAA- 994
Query: 421 RGAIGPAELFSLGRYLEPRSNRRKAYALALFAINYLQPVEVQDVCPVATDHDISWHACLL 600
G + ++LF++ RY+E R +A+ LA A+++L QD P +D+ W L
Sbjct: 995 AGGMTHSQLFTIARYMELRGYPLRAFKLASLAMSHLNLAYNQDTHPAI--NDVLWACALS 1052
Query: 601 IVLYRSRIDMISQLVRK 651
L ++ + + LV K
Sbjct: 1053 HSLGKNELAALIPLVVK 1069
>sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain containing protein 5
Length = 1185
Score = 97.1 bits (240), Expect = 4e-20
Identities = 65/197 (32%), Positives = 97/197 (49%)
Frame = +1
Query: 61 EMVQWLISCAVPVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPGLSRVIVESHSHH 240
EMV+WL++CA VG + ++ +W TP EA VA+T + T L
Sbjct: 886 EMVRWLVTCATEVGVRALVSILQSWYTLFTPTEATSIVAATAVSHTTILRL--------- 936
Query: 241 SSNGQISVTQDERVRREVRKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAAE 420
+ Q E + R +AL+ A KDP C + AL+L EKD FEA YQ DAA
Sbjct: 937 ----SLDYPQREELASCARTLALQCAMKDPQSCALSALTLCEKDHIAFEAAYQIAIDAA- 991
Query: 421 RGAIGPAELFSLGRYLEPRSNRRKAYALALFAINYLQPVEVQDVCPVATDHDISWHACLL 600
G + ++LF++ RY+E R +A+ LA A+++L QD P +D+ W L
Sbjct: 992 AGGMTHSQLFTIARYMELRGYPLRAFKLASLAMSHLNLAYNQDTHPAI--NDVLWACALS 1049
Query: 601 IVLYRSRIDMISQLVRK 651
L ++ + + LV K
Sbjct: 1050 HSLGKNELAALIPLVVK 1066
>sp|Q8IX15|HOMEZ_HUMAN Homeobox-leucine zipper protein Homez (Homeodomain leucine
zipper-containing factor)
Length = 525
Score = 31.6 bits (70), Expect = 2.1
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 313 AASK--DPLHCGMRALSLSEK--DPHMFEATYQAIYDAAERGAIGPAELFSLGRYLEPRS 480
AASK PL C +++S SE+ PH+ A Q + + G +GP E S + ++
Sbjct: 277 AASKPLQPLGCVPQSVSPSEQALPPHLEPAWPQGLRHNSVPGRVGPTEYLSPDMQRQRKT 336
Query: 481 NRRKAYALALFAINYLQ 531
R+ LA+ +LQ
Sbjct: 337 KRKTKEQLAILKSFFLQ 353
>sp|P17736|HIS8_HALVO Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 361
Score = 30.0 bits (66), Expect = 6.1
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 11/139 (7%)
Frame = +1
Query: 142 YITPKEAVLQVASTLLGPTPGLSRVIVESHSHHSSNGQISVTQDERVRR---------EV 294
Y+T AVL+ +L P PG S + + HH Q V++D+ + +
Sbjct: 97 YLT--RAVLEPDDRILEPAPGFSYYSMSARYHHGDAVQYEVSKDDDFEQTADLVLDAYDG 154
Query: 295 RKMALEAASKDPLHCGMRALSLSEKDPHMFEATYQAIYDAAERGAIGPAELFSLGRYLEP 474
+M +P + L E + E T + +A A P+ + L Y
Sbjct: 155 ERMVYLTTPHNPTGSVLpreELVELAESVEEHTLLVVDEAYGEFAEEPSAIDLLSEYDNV 214
Query: 475 RSNR--RKAYALALFAINY 525
+ R KAY LA I Y
Sbjct: 215 AALRTFSKAYGLAGLRIGY 233
>sp|P41250|SYG_HUMAN Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS)
Length = 739
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 94 PVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPGL 207
PVG +++ WR + +E +L++ T+L P P L
Sbjct: 152 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVL 189
>sp|Q5RBL1|SYG_PONPY Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS)
Length = 739
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 94 PVGTVGIFHLVSNWRHYITPKEAVLQVASTLLGPTPGL 207
PVG +++ WR + +E +L++ T+L P P L
Sbjct: 152 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVL 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,613,182
Number of Sequences: 369166
Number of extensions: 1491382
Number of successful extensions: 3894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3882
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)