Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O16
(581 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 206 3e-53
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 201 1e-51
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 200 2e-51
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 200 2e-51
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 199 4e-51
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 184 2e-46
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 157 2e-38
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 128 9e-30
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 117 3e-26
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 108 1e-23
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 206 bits (525), Expect = 3e-53
Identities = 100/168 (59%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGR 179
F+ YR++Y++GGVSSVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR
Sbjct: 133 FDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGR 192
Query: 180 NARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENS 359
A YKLTST+MLWL+T S +G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN
Sbjct: 193 TAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENK 252
Query: 360 IRKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNKNQ 503
IR LN++YFG +K++V+ LRS + + + +Q L D+ A++ K Q
Sbjct: 253 IRSTLNEIYFGKTKDIVNGLRSVQTFADKSKQEALKNDLVEALKRKQQ 300
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 201 bits (510), Expect = 1e-51
Identities = 97/167 (58%), Positives = 125/167 (74%), Gaps = 1/167 (0%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGR 179
F+ YREMYY+GGVSSVYLWDLD GFA +LIKKAGD K GCWDSIHV+EV+EK +GR
Sbjct: 104 FDQYREMYYEGGVSSVYLWDLDHGFAAVILIKKAGDGSKMIRGCWDSIHVVEVQEKTTGR 163
Query: 180 NARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENS 359
A YKLTST MLWL+T +G NLGGSLTR E++ +S+++ HI NIG++VE+MEN
Sbjct: 164 TAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVEEMENK 223
Query: 360 IRKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNKN 500
IR LN++YFG +K++V+ LRS S + + QQ + QD+ AI +N
Sbjct: 224 IRNTLNEIYFGKTKDIVNGLRSTQSLADQRQQAAMKQDLAAAILRRN 270
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 200 bits (508), Expect = 2e-51
Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGR 179
F+ YR++Y++GGVSSVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR
Sbjct: 104 FDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGR 163
Query: 180 NARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENS 359
A YKLTST+MLWL+T S +G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN
Sbjct: 164 TAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENK 223
Query: 360 IRKQLNDVYFGTSKNLVDSLRS 425
IR LN++YFG +K++V+ LRS
Sbjct: 224 IRSTLNEIYFGKTKDIVNGLRS 245
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 200 bits (508), Expect = 2e-51
Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGR 179
F+ YR++Y++GGVSSVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR
Sbjct: 104 FDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGR 163
Query: 180 NARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENS 359
A YKLTST+MLWL+T S +G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN
Sbjct: 164 TAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENK 223
Query: 360 IRKQLNDVYFGTSKNLVDSLRS 425
IR LN++YFG +K++V+ LRS
Sbjct: 224 IRSTLNEIYFGKTKDIVNGLRS 245
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 199 bits (506), Expect = 4e-51
Identities = 93/142 (65%), Positives = 115/142 (80%), Gaps = 1/142 (0%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGR 179
F+ YR++Y++GGVSSVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR
Sbjct: 104 FDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGR 163
Query: 180 NARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENS 359
A YKLTST+MLWL+T + +G NLGGSLTR EK+ +SD++ HI NIGRLVEDMEN
Sbjct: 164 TAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENK 223
Query: 360 IRKQLNDVYFGTSKNLVDSLRS 425
IR LN++YFG +K++V+ LRS
Sbjct: 224 IRSTLNEIYFGKTKDIVNGLRS 245
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 184 bits (466), Expect = 2e-46
Identities = 88/167 (52%), Positives = 123/167 (73%), Gaps = 2/167 (1%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSG-FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSG 176
FE YR++Y++GGVSSVY WDLD+G FAG VLIKK GD K+ TGCWDSIHVIE+ E+
Sbjct: 104 FESYRDLYFEGGVSSVYFWDLDNGGFAGIVLIKKEGDGAKNITGCWDSIHVIEITERA-- 161
Query: 177 RNARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMEN 356
R A YKLTSTIMLWL+T S +G NLGGSLTR E + P++D N H+ N+GR++ED E+
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQES 221
Query: 357 SIRKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNK 497
+R +N++YFG +K ++ LRS +S ++Q ++ +++ A+ N+
Sbjct: 222 KMRLTINEIYFGKTKKVMSDLRSTEKQSELEKQDEIVRELNNAMANR 268
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 157 bits (396), Expect = 2e-38
Identities = 80/169 (47%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGDIKSA----TGCWDSIHVIEVEEKG 170
FE+Y +Y++GGVSSVY WDLD FA VL+KK D G WDSIHV+EV+ G
Sbjct: 104 FEIYLNLYFEGGVSSVYCWDLDDNFAAVVLMKKTQDQSKKGQPMRGTWDSIHVVEVK-LG 162
Query: 171 SGRNARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDM 350
A YKLTST+ML +ET N TG NL GSLTR EKE ++ + H VNIG++VEDM
Sbjct: 163 KKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDM 222
Query: 351 ENSIRKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNK 497
E+ +R+ L +YFG +K +V++LR+ S ++++ L + AI N+
Sbjct: 223 ESKLRQTLETIYFGKTKEVVNTLRNATGNSELEKRKNLSNQIGSAIGNR 271
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 128 bits (322), Expect = 9e-30
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 5/144 (3%)
Frame = +3
Query: 9 VYREMYYDGGVSSVYLWDLDSGFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNAR 188
VY ++YY+GGVSSVYLWD D +AGAVLIKKA S+ WDSIHV E
Sbjct: 104 VYLDLYYEGGVSSVYLWDQDDSYAGAVLIKKASTSNSSG--WDSIHVFECLPTTETNVYD 161
Query: 189 YKLTSTIMLWLETQNSETGCF-----NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDME 353
Y+LTSTI+L+L + + E NL G LTR T + +P +D + I N+G+LVE+ME
Sbjct: 162 YRLTSTIILFLSSGSEEQSALPSKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEME 221
Query: 354 NSIRKQLNDVYFGTSKNLVDSLRS 425
+R L DVYFG +K++++ RS
Sbjct: 222 TRMRNFLQDVYFGKTKDIINQTRS 245
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 117 bits (292), Expect = 3e-26
Identities = 62/148 (41%), Positives = 92/148 (62%), Gaps = 8/148 (5%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDS-GFAGAVLIKKAGDIKS-------ATGCWDSIHVIEV 158
F +YR+ YY+GG+SSVY+W+ D+ GF LIKK G G WD+IHVI+V
Sbjct: 99 FAIYRDQYYEGGISSVYMWEDDNEGFVACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQV 158
Query: 159 EEKGSGRNARYKLTSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRL 338
+ A+Y LTSTIML L T + +G F L GS+ R + E+ ++D H+ N+GR+
Sbjct: 159 GSEEE-EMAQYCLTSTIMLSLTTDDESSGKFGLSGSIRRQMKMELAVADG--HLCNMGRM 215
Query: 339 VEDMENSIRKQLNDVYFGTSKNLVDSLR 422
+E++E +R L+ VYFG ++ +V +LR
Sbjct: 216 IEELEGKLRNSLDQVYFGKTREMVCTLR 243
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 108 bits (270), Expect = 1e-23
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 15/171 (8%)
Frame = +3
Query: 3 FEVYREMYYDGGVSSVYLWDLDS------GFAGAVLIKKAGDIKSATGCWDSIHVIEVEE 164
F+VYR++YY+GG+SSVYLWDL+ FAG VL KK +S WDSIHV EV
Sbjct: 110 FDVYRDLYYEGGISSVYLWDLNEEDFNGHDFAGVVLFKKN---QSDHSNWDSIHVFEVTT 166
Query: 165 KGSGRNA-RYKLTSTIMLWLE-TQNSETGCFNLGGSLTRMTEKEVPLSDA-------NNH 317
S ++ Y++T+TI+L L+ T+ + L G+LTR TEK++ + + +H
Sbjct: 167 SPSSPDSFNYRVTTTIILHLDKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSH 226
Query: 318 IVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQ 470
+ N+G L+ED+E+ +R L VYF ++++ ++ S ++ K Q
Sbjct: 227 VANLGSLIEDIESQMRNLLETVYFEKTRDIFHQTKNAAIASSAEEANKDAQ 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,021,304
Number of Sequences: 369166
Number of extensions: 1455201
Number of successful extensions: 3569
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3543
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)