Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O11
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 152 4e-37
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 151 5e-37
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 151 6e-37
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 143 2e-34
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 133 2e-31
sp|P36411|RAB7_DICDI Ras-related protein Rab7 125 5e-29
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 119 4e-27
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 117 8e-27
sp|P93267|RAB7_MESCR Ras-related protein Rab7A 115 4e-26
sp|P31022|RAB7_PEA Ras-related protein Rab7 115 5e-26
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 152 bits (383), Expect = 4e-37
Identities = 71/113 (62%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFEC 180
TF TLDSWRDEFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ WC SK +I YFE
Sbjct: 95 TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154
Query: 181 SAKEALNVEQAFQNVARAALAQENETDIISEFPDKINL-ANNNPQNQSSSCTC 336
SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ I L N+ + + SC+C
Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSAESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 151 bits (382), Expect = 5e-37
Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFEC 180
TF TLDSWRDEFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ WC SK +I YFE
Sbjct: 95 TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154
Query: 181 SAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSS-SCTC 336
SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ I L N+ S+ SC+C
Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 151 bits (381), Expect = 6e-37
Identities = 72/113 (63%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFEC 180
TF TLDSWRDEFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ WC SK +I YFE
Sbjct: 95 TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154
Query: 181 SAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSS-SCTC 336
SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ I L N S+ SC+C
Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 143 bits (360), Expect = 2e-34
Identities = 68/113 (60%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFEC 180
TF TLDSWR EFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ W SK +I YFE
Sbjct: 95 TFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWSYSKNNIPYFET 154
Query: 181 SAKEALNVEQAFQNVARAALAQENETDIISEFPDKINL-ANNNPQNQSSSCTC 336
SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ + L N+ + + SC+C
Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSAESCSC 207
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 133 bits (334), Expect = 2e-31
Identities = 65/114 (57%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGE--RNVTTRRAQQWCQSKGDIAYF 174
+F LDSWRDEFLIQ+SPRDPD+FPFVV+GNK+D+ E R ++T+RA +CQSKG+I YF
Sbjct: 95 SFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYF 154
Query: 175 ECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSSSCTC 336
E SAKEA+NVEQAF+ +AR AL QE + +F D IN+ + +N C C
Sbjct: 155 ETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINI---HIENDRDGCAC 205
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 125 bits (313), Expect = 5e-29
Identities = 64/111 (57%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL-GERNVTTRRAQQWCQSKGDIAYFE 177
TF LDSWRDEFLIQ+ PRDPD+FPFVV+GNK+DL +R V+ +RA WCQSKG+I YFE
Sbjct: 95 TFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFE 154
Query: 178 CSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSSSC 330
SAKEA+NVEQAFQ +AR A+ E+ ++ P I + PQ S C
Sbjct: 155 TSAKEAINVEQAFQTIARNAIKLED--GLVFPIPTNIQVI-PEPQPAKSGC 202
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 119 bits (297), Expect = 4e-27
Identities = 58/114 (50%), Positives = 85/114 (74%), Gaps = 2/114 (1%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGE--RNVTTRRAQQWCQSKGDIAYF 174
+F TLDSWRDEFLIQ+SP +P+ FPF+++GNKVD+ E R V+ +A +CQ++G+I YF
Sbjct: 95 SFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYF 154
Query: 175 ECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSSSCTC 336
E SAKEA+NV++AF+ VA+ AL + DI ++F D I+L + ++Q +SC C
Sbjct: 155 ETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHL---DMESQKTSCYC 205
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 117 bits (294), Expect = 8e-27
Identities = 57/115 (49%), Positives = 80/115 (69%), Gaps = 3/115 (2%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL---GERNVTTRRAQQWCQSKGDIAY 171
+F L++WR+EFLIQ++P DP++FPFVV+GNK+D+ R V+ ++A+ WC SKG+I Y
Sbjct: 95 SFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPY 154
Query: 172 FECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSSSCTC 336
FE SAKE NV+ AFQ +A+ AL E E +I PD I++A Q +SS C C
Sbjct: 155 FETSAKEGFNVDDAFQCIAKNALNNEPEEEIY--LPDTIDVAGGGRQQRSSGCEC 207
>sp|P93267|RAB7_MESCR Ras-related protein Rab7A
Length = 207
Score = 115 bits (288), Expect = 4e-26
Identities = 55/115 (47%), Positives = 82/115 (71%), Gaps = 3/115 (2%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL---GERNVTTRRAQQWCQSKGDIAY 171
+F +L+ WR+EFLIQ+SP DPD+FPFV++GNK+D+ R V+ ++A+ WC SKG+I Y
Sbjct: 95 SFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPY 154
Query: 172 FECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSSSCTC 336
FE SAK+ NVE+AFQ +A+ A+ +NE + + PD I++A + SS+C C
Sbjct: 155 FETSAKDGTNVEEAFQCIAKNAI--QNEPEEETYLPDTIDMAGSTRPQSSSACEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
Length = 206
Score = 115 bits (287), Expect = 5e-26
Identities = 55/115 (47%), Positives = 83/115 (72%), Gaps = 3/115 (2%)
Frame = +1
Query: 1 TFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL---GERNVTTRRAQQWCQSKGDIAY 171
+F L++WR+EFLIQ++P DP++FPFVVIGNK+D+ R V+ ++A+ WC +KG+I Y
Sbjct: 95 SFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPY 154
Query: 172 FECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQSSSCTC 336
FE SAKE +NVE+AFQ +A+ AL E ++ PD I++ N++ Q +S+ C C
Sbjct: 155 FETSAKEGINVEEAFQTIAKDALKSGEEEELY--LPDTIDVGNSS-QPRSTGCEC 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,955,170
Number of Sequences: 369166
Number of extensions: 772439
Number of successful extensions: 2170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)