Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O10
(390 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R0Q7|TEBP_MOUSE Telomerase-binding protein p23 (Hsp90 ... 71 7e-13
sp|Q15185|TEBP_HUMAN Telomerase-binding protein p23 (Hsp90 ... 71 7e-13
sp|Q23280|YOCA_CAEEL Hypothetical protein ZC395.10 in chrom... 70 2e-12
sp|Q11118|WOS2_SCHPO Protein wos2 (p21) 65 4e-11
sp|Q9VH95|YC17_DROME Hypothetical protein CG16817 61 9e-10
sp|Q6ID70|Y3377_ARATH Protein At3g03773 61 9e-10
sp|Q90955|TEBP_CHICK Telomerase-binding protein p23 (Hsp90 ... 60 1e-09
sp|P28707|SBA1_YEAST Co-chaperone protein SBA1 49 5e-06
sp|O48850|VA725_ARATH Vesicle-associated membrane protein 7... 35 0.053
sp|Q01053|VG58_SHV21 Gene 58 protein 31 0.76
>sp|Q9R0Q7|TEBP_MOUSE Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone
receptor complex p23) (Sid 3177)
Length = 160
Score = 71.2 bits (173), Expect = 7e-13
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +2
Query: 44 WAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDDYKQI 223
W R+DY++I C+ D KD N++ ++ +F+ + G + ++D + +D K
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67
Query: 224 STDREIVLLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWK 343
TDR I+ ++K SG WP L TK K +WL DFN WK
Sbjct: 68 RTDRSILCCLRKGESGQSWPRL-TKERAKLNWLSVDFNNWK 107
>sp|Q15185|TEBP_HUMAN Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone
receptor complex p23)
Length = 160
Score = 71.2 bits (173), Expect = 7e-13
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +2
Query: 44 WAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDDYKQI 223
W R+DY++I C+ D KD N++ ++ +F+ + G + ++D + +D K
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67
Query: 224 STDREIVLLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWK 343
TDR I+ ++K SG WP L TK K +WL DFN WK
Sbjct: 68 RTDRSILCCLRKGESGQSWPRL-TKERAKLNWLSVDFNNWK 107
>sp|Q23280|YOCA_CAEEL Hypothetical protein ZC395.10 in chromosome III
Length = 175
Score = 69.7 bits (169), Expect = 2e-12
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 32 PTVLWAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDD 211
PTVLWAQR+ +Y+TI + + K + + + + F G S Y L+F ++
Sbjct: 5 PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62
Query: 212 YKQI-STDREIVLLIKKSTSGFWPSLITKRGPKPHWLKTDFNRWK 343
K S+ R + + ++K T +WP L+ +G K HWLK DF +WK
Sbjct: 63 VKHTGSSTRVVEITVQKKTPAWWPRLLQNKG-KVHWLKVDFGKWK 106
>sp|Q11118|WOS2_SCHPO Protein wos2 (p21)
Length = 186
Score = 65.5 bits (158), Expect = 4e-11
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Frame = +2
Query: 32 PTVLWAQR-------KDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFH 190
P VLWAQR K+ +Y+T+ I D D +++ + + SG YAV++DF
Sbjct: 8 PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAH-YAVQIDFF 66
Query: 191 SKVHTDDYKQISTDREI--VLLIKKSTSGFWPSLITKRGPKPHWLKTDFNRW 340
+ + K T R I VL K+ FWP L TK + HWL+TDF+RW
Sbjct: 67 KDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRL-TKEKLRLHWLRTDFDRW 117
>sp|Q9VH95|YC17_DROME Hypothetical protein CG16817
Length = 184
Score = 60.8 bits (146), Expect = 9e-10
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = +2
Query: 23 ILHPTVLWAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPP-KPYAVKLDFHSKV 199
++ P V WAQR D +Y+ I + + KD + E +F+F G++ + P K Y V L+F +V
Sbjct: 7 LIPPPVSWAQRNDLIYVIIDV-ECKDIEHKVTEKTFTFKGVNVLDPSKKYEVTLNFLHEV 65
Query: 200 HTDDYKQISTDREIVLLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWK 343
+ + R + I K +G +W SL T + K H+LK +F +W+
Sbjct: 66 DPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDK-TKLHFLKANFAKWR 113
>sp|Q6ID70|Y3377_ARATH Protein At3g03773
Length = 150
Score = 60.8 bits (146), Expect = 9e-10
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 29 HPTVLWAQRKDYLYITICIGDIKDKNMSIK-EDSFSFNGISGVPPKPYAVKLDFHSKVHT 205
+P VLWAQR D +Y+T+ + D KD ++ + + FSF+ + G + + L+ + K+ T
Sbjct: 4 NPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKIMT 62
Query: 206 DDYKQISTDREIVLLIKKSTSGFWPSLITKRGPKPHWLKTDFNRW 340
+ K + R I+ I+K +W L+ ++K D+N+W
Sbjct: 63 EYRKNVGL-RNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKW 106
>sp|Q90955|TEBP_CHICK Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone
receptor complex p23)
Length = 146
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +2
Query: 65 LYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDDYKQISTDREIV 244
++I C+ D KD N++ ++ +F+ + G + ++D + + ++ K TDR I+
Sbjct: 1 VFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFNNIDPNESKHKRTDRSIL 60
Query: 245 LLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWK 343
++K SG WP L TK K +WL DFN WK
Sbjct: 61 CCLRKGESGQAWPRL-TKERAKLNWLSVDFNNWK 93
>sp|P28707|SBA1_YEAST Co-chaperone protein SBA1
Length = 216
Score = 48.5 bits (114), Expect = 5e-06
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Frame = +2
Query: 20 EILHPTVLWAQR-------KDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVK 178
++++P V WAQR ++Y+ IT+ I D ++IK S KP+
Sbjct: 4 KVINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQS----KPHVGD 59
Query: 179 LDFHS-KVHTDDYKQISTDREI----------VLLIKKST-SGFWPSLITKRGPKPHWLK 322
+ H ++H D YK+I ++ + + L KK S +WP L TK K ++K
Sbjct: 60 ENVHHYQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRL-TKEKVKYPYIK 118
Query: 323 TDFNRW 340
TDF++W
Sbjct: 119 TDFDKW 124
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 285
Score = 35.0 bits (79), Expect = 0.053
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 172 SIGLWWNSRNAIK*KGIFFNTHVFILNITNTYGDIQIIFS 53
S+ LWWNS+N I+ FF F+L +T T G +I+S
Sbjct: 39 SLSLWWNSKNRIRGCVWFF----FLLRVTRTMGQQNLIYS 74
>sp|Q01053|VG58_SHV21 Gene 58 protein
Length = 357
Score = 31.2 bits (69), Expect = 0.76
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = +3
Query: 6 LVIMLKFYTLLYCGLREKIICISPYVLVILRIKT*VLKKIPFHLM------AFLEFHQSP 167
+V + F T Y L + YV+V R+ V+ PF L A FH+ P
Sbjct: 125 IVYLCPFITYKYYELGFLNAMLLYYVMVANRMYLSVIFMCPFVLFLGMGVFALKNFHEHP 184
Query: 168 MLSNLISTAKFILMIINKFQRIG 236
+ N++ T K I NK++ G
Sbjct: 185 VFENILITCKPIFTAKNKYKTKG 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,706,548
Number of Sequences: 369166
Number of extensions: 833310
Number of successful extensions: 1649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)