Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O07
(642 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O77735|SCAM1_PIG Secretory carrier-associated membrane p... 67 3e-11
sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane... 66 7e-11
sp|Q8K021|SCAM1_MOUSE Secretory carrier-associated membrane... 66 7e-11
sp|P56603|SCAM1_RAT Secretory carrier-associated membrane p... 66 7e-11
sp|Q58DR5|SCAM3_BOVIN Secretory carrier-associated membrane... 64 3e-10
sp|O14828|SCAM3_HUMAN Secretory carrier-associated membrane... 61 3e-09
sp|O35609|SCAM3_MOUSE Secretory carrier-associated membrane... 60 5e-09
sp|O15127|SCAM2_HUMAN Secretory carrier-associated membrane... 56 7e-08
sp|Q9ERN0|SCAM2_MOUSE Secretory carrier-associated membrane... 51 2e-06
sp|Q9ET20|SCAM4_RAT Secretory carrier-associated membrane p... 49 8e-06
>sp|O77735|SCAM1_PIG Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1)
Length = 338
Score = 67.4 bits (163), Expect = 3e-11
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 154 IFEKSYVKYFYVHVKI*IEFTYFS--GWINSLAELKTSVGVGAFMCIIAGCYTVVLITGS 327
+F Y+ F VHV F + GWI+SL L S+ VG M IIA +T +
Sbjct: 220 VFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISL 279
Query: 328 ILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 420
++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 280 VMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1)
Length = 338
Score = 66.2 bits (160), Expect = 7e-11
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 154 IFEKSYVKYFYVHVKI*IEFTYFS--GWINSLAELKTSVGVGAFMCIIAGCYTVVLITGS 327
+F Y+ F VHV F + GWI+SL L ++ VG M IIA +T +
Sbjct: 220 VFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISL 279
Query: 328 ILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 420
++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 280 VMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|Q8K021|SCAM1_MOUSE Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1)
Length = 338
Score = 66.2 bits (160), Expect = 7e-11
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 154 IFEKSYVKYFYVHVKI*IEFTYFS--GWINSLAELKTSVGVGAFMCIIAGCYTVVLITGS 327
+F Y+ F VHV F + GWI+SL L ++ VG M IIA +T +
Sbjct: 220 VFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISL 279
Query: 328 ILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 420
++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 280 VMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|P56603|SCAM1_RAT Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1) (SCAMP 37)
Length = 338
Score = 66.2 bits (160), Expect = 7e-11
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 154 IFEKSYVKYFYVHVKI*IEFTYFS--GWINSLAELKTSVGVGAFMCIIAGCYTVVLITGS 327
+F Y+ F VHV F + GWI+SL L ++ VG M IIA +T +
Sbjct: 220 VFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISL 279
Query: 328 ILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 420
++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 280 VMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|Q58DR5|SCAM3_BOVIN Secretory carrier-associated membrane protein 3 (Secretory carrier
membrane protein 3)
Length = 347
Score = 63.9 bits (154), Expect = 3e-10
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +1
Query: 220 FSGWINSLAELKTSVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEF 399
FSGWI++L LK + V M ++A +T + + G +++ ++H +YR TGASF+KA+ EF
Sbjct: 259 FSGWISALVVLKVNTAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYRRTGASFQKAQQEF 318
Query: 400 SRDLVSN 420
+ + SN
Sbjct: 319 AAGVFSN 325
>sp|O14828|SCAM3_HUMAN Secretory carrier-associated membrane protein 3 (Secretory carrier
membrane protein 3)
Length = 347
Score = 60.8 bits (146), Expect = 3e-09
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +1
Query: 220 FSGWINSLAELKTSVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEF 399
FSGWI++L K + V M ++A +T + + G +++ ++H +YR TGASF+KA+ EF
Sbjct: 259 FSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGASFQKAQQEF 318
Query: 400 SRDLVSN 420
+ + SN
Sbjct: 319 AAGVFSN 325
>sp|O35609|SCAM3_MOUSE Secretory carrier-associated membrane protein 3 (Secretory carrier
membrane protein 3)
Length = 349
Score = 60.1 bits (144), Expect = 5e-09
Identities = 28/80 (35%), Positives = 48/80 (60%)
Frame = +1
Query: 181 FYVHVKI*IEFTYFSGWINSLAELKTSVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYR 360
F+V I I FSGW+ +L + + V M ++A +T + + G +++ ++H +YR
Sbjct: 248 FFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 307
Query: 361 STGASFEKAKAEFSRDLVSN 420
TGASF+KA+ EF+ + SN
Sbjct: 308 QTGASFQKAQQEFAAGVFSN 327
>sp|O15127|SCAM2_HUMAN Secretory carrier-associated membrane protein 2 (Secretory carrier
membrane protein 2)
Length = 329
Score = 56.2 bits (134), Expect = 7e-08
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +1
Query: 223 SGWINSLAELKT-SVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEF 399
SGWI +L+ L S+ + M ++AG +T+ + L+ +VH +YR TGASF++A+ EF
Sbjct: 245 SGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQAQEEF 304
Query: 400 SRDLVSN 420
S+ + S+
Sbjct: 305 SQGIFSS 311
>sp|Q9ERN0|SCAM2_MOUSE Secretory carrier-associated membrane protein 2 (Secretory carrier
membrane protein 2)
Length = 329
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 223 SGWINSLAELKTS-VGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEF 399
SGW+ +L+ +K + V M ++AG +T+ L+ +VH YR TGASF++A+ EF
Sbjct: 245 SGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRTGASFQQAQEEF 304
Query: 400 SRDLVSN 420
S+ + S+
Sbjct: 305 SQGIFSS 311
>sp|Q9ET20|SCAM4_RAT Secretory carrier-associated membrane protein 4 (Secretory carrier
membrane protein 4) (SCAMP-4)
Length = 230
Score = 49.3 bits (116), Expect = 8e-06
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +1
Query: 226 GWINSLAELKTSVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFS 402
GW+ ++ TSVG M I A +++ + +I I KVHRIYR G S +KA+ E+S
Sbjct: 133 GWLATIGFFGTSVGAAVVMLIPAIMFSLSAVVMAITIVKVHRIYRGAGGSLQKAQTEWS 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,495,516
Number of Sequences: 369166
Number of extensions: 1102938
Number of successful extensions: 2145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)