Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O06
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44783|SPY_DROME Protein sprouty (Spry) 32 0.34
sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class... 30 2.2
sp|P38565|MUCB1_XENLA Integumentary mucin B.1 (FIM-B.1) 29 3.8
sp|O81086|TPSD1_ABIGR Alpha-bisabolene synthase ((E)-alpha-... 28 5.0
>sp|O44783|SPY_DROME Protein sprouty (Spry)
Length = 589
Score = 32.3 bits (72), Expect = 0.34
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 213 DNLCSILHRCLLFLDQQFHIYLVNHR*SLQDKQLQ*PQRMQDKLHCEQHNQHH 55
DN + H LL + H++L H+ LQ +Q Q Q+ Q + Q NQ H
Sbjct: 220 DNGQTTTHHLLLLPQRNQHLHLQQHQQHLQQQQQQQQQQQQQQHLQHQQNQQH 272
>sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class C (TETA(C))
Length = 396
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 33 GIVGDVLHGVGCAAHNVVCLAFFAATEVVC---LGAITD 140
G++ D++H A+H V LA +A + +C LGA++D
Sbjct: 30 GLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSD 68
>sp|P38565|MUCB1_XENLA Integumentary mucin B.1 (FIM-B.1)
Length = 398
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 160 PHLSCKSSVIAPRQTTSVAAKNARQTTL*AAQPTPCRTSPTIPKIFSSFST 8
P + S AP +TT + +TT+ + + TP + T+P + S ST
Sbjct: 36 PSETTGESTPAPSETTGESTPAPSETTVPSGESTPAPSETTVPSVPSGEST 86
>sp|O81086|TPSD1_ABIGR Alpha-bisabolene synthase ((E)-alpha-bisabolene synthase)
(AgfEabis)
Length = 817
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 99 FAATEVVCLGAITDDLQDKCGTVDQ 173
F T+V CL + DD+ D GT+D+
Sbjct: 553 FLFTKVACLQTVLDDMYDTYGTLDE 577
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,203,502
Number of Sequences: 369166
Number of extensions: 478048
Number of successful extensions: 1466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)