Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O04
(375 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14019|COTL1_HUMAN Coactosin-like protein 111 5e-25
sp|Q9CQI6|COTL1_MOUSE Coactosin-like protein 109 2e-24
sp|P34121|COAC_DICDI Coactosin (Cytoskeletal p17 protein) (... 86 2e-17
sp|Q9P7E8|APP1_SCHPO Protein app1 44 9e-05
sp|Q01381|ELYS_HALFU Egg-lysin precursor (Sperm-lysin) 30 1.7
sp|Q50328|ATPD_MYCPN ATP synthase delta chain 29 3.8
sp|Q8XJR3|DPO3_CLOPE DNA polymerase III polC-type (PolIII) 28 5.0
sp|P04552|ELYS_HALRU Egg-lysin precursor (Sperm-lysin) 28 6.5
sp|Q01384|ELYS_HALWA Egg-lysin precursor (Sperm-lysin) 28 6.5
sp|Q63WJ7|EFG1_BURPS Elongation factor G 1 (EF-G 1) >gi|622... 28 8.5
>sp|Q14019|COTL1_HUMAN Coactosin-like protein
Length = 142
Score = 111 bits (278), Expect = 5e-25
Identities = 56/118 (47%), Positives = 76/118 (64%)
Frame = +2
Query: 2 DATETTWALFGYDDKKIVVVKTGTLYESLLAEFNDDERHFAFVRMITGDEMSKRAKFALI 181
D + W F YD IV + G Y+ + + DD R FAFVR TGD MSKR+KFALI
Sbjct: 20 DGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFALI 79
Query: 182 TYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSDKNEITESKLRAALEKAGGANY 355
T+ G NVS +++A DK+LVKEVV ++A + SD+ E+ E +++ L+KAGGANY
Sbjct: 80 TWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSELKKAGGANY 137
>sp|Q9CQI6|COTL1_MOUSE Coactosin-like protein
Length = 142
Score = 109 bits (272), Expect = 2e-24
Identities = 56/118 (47%), Positives = 75/118 (63%)
Frame = +2
Query: 2 DATETTWALFGYDDKKIVVVKTGTLYESLLAEFNDDERHFAFVRMITGDEMSKRAKFALI 181
D + W F YD IV G Y+ + + DD R FAFVR TGD MSKR+KFALI
Sbjct: 20 DGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFALI 79
Query: 182 TYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSDKNEITESKLRAALEKAGGANY 355
T+ G +VS +++A DK+LVKEVV ++A + SD+ E+ E +R+ L+KAGGANY
Sbjct: 80 TWIGEDVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIRSELKKAGGANY 137
>sp|P34121|COAC_DICDI Coactosin (Cytoskeletal p17 protein) (Cyclic AMP-regulated protein
p16)
Length = 146
Score = 86.3 bits (212), Expect = 2e-17
Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Frame = +2
Query: 2 DATETTWALFGYDDKKIVVV--KTGTLYESLLAEFND-DERHFAFVRMITGDEMSKRAKF 172
D+ +T W LF Y+ K +V+ K + L E N ER +A++R+++GD+ SKR+KF
Sbjct: 19 DSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQEINQPSERLYAYLRVVSGDDESKRSKF 78
Query: 173 ALITYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSDKNEITESKLRAALEKAGGAN 352
I++CG V + KAN++V K+ VK+V+ + V++ + +++ E +L + K+ GA+
Sbjct: 79 VFISWCGEEVGPLAKANVSVHKASVKQVIKNIGVEVHYTVADDLNEEELMTKVRKSSGAD 138
Query: 353 YGSAK*T 373
Y K T
Sbjct: 139 YSGNKST 145
>sp|Q9P7E8|APP1_SCHPO Protein app1
Length = 857
Score = 44.3 bits (103), Expect = 9e-05
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +2
Query: 5 ATETTWALFGYDDKK---IVVVKTGTLYESLLAEFNDDERHFAFVRMITGDEMSKRAKFA 175
A + +WA+FGY+ + + VV +G + L EF+++ F F+R+ D + KF
Sbjct: 25 ADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRV--KDVNTGLNKFV 82
Query: 176 LITYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSDKNEITESKLRAALEKAGGANY 355
L+ +CG + +K ++ + V ++ Y V + + +++ + + A G+ Y
Sbjct: 83 LVCWCGE--AAARKGLFSIHMATVSNLLKGYHVQITGRESSDLNMDDIIRRVADASGSKY 140
>sp|Q01381|ELYS_HALFU Egg-lysin precursor (Sperm-lysin)
Length = 154
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 9 LKPHGRYSDMTTKKSLLLKQELYMNLYWQNSMM 107
L+ HGR KK+L YM +WQN M+
Sbjct: 53 LRVHGRRLTNNQKKTLFFVNRRYMQTHWQNYML 85
>sp|Q50328|ATPD_MYCPN ATP synthase delta chain
Length = 178
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 44 KKIVVVKTGTLYESLLAEFND---DERHFAFVRMITGDEMSKRAKFALITYCGANVSVMK 214
K IV+ L E L F D +E+H F+R+IT E+S ++ ++
Sbjct: 78 KTIVLKGYFNLVEQALKYFFDCVENEKHVQFIRIITAFELSAPQLKRIVAAMEKKLNSKI 137
Query: 215 KANLTVDKSLVKEVVASYAVDLF 283
+DKSL+ + + LF
Sbjct: 138 VYKTEIDKSLISGIRIESSAQLF 160
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III polC-type (PolIII)
Length = 1449
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 134 MITGDEMSKRAKFALITYCGANVSVMKKANLT---VDKSLVKEVVASYAVDLFTSD--KN 298
+I E + +AK + G N+SV +K LT + + K + VDL+ S+ K
Sbjct: 1317 LICKGEEAIKAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKF 1376
Query: 299 EITESKLRAALEKAGGANYGSAK 367
+I E +R L G +AK
Sbjct: 1377 KIEEDGIRPPLNALQGVGDNAAK 1399
>sp|P04552|ELYS_HALRU Egg-lysin precursor (Sperm-lysin)
Length = 154
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 9 LKPHGRYSDMTTKKSLLLKQELYMNLYWQNSMM 107
L+ HGR KK+L YM +W N M+
Sbjct: 53 LRVHGRTLSTVQKKALYFVNRRYMQTHWANYML 85
>sp|Q01384|ELYS_HALWA Egg-lysin precursor (Sperm-lysin)
Length = 154
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 9 LKPHGRYSDMTTKKSLLLKQELYMNLYWQNSMM 107
L+ HGR KK+L YM +W N M+
Sbjct: 53 LRAHGRSLSHVQKKALYFVNRRYMQTHWANYML 85
>sp|Q63WJ7|EFG1_BURPS Elongation factor G 1 (EF-G 1)
sp|Q62HK4|EFG1_BURMA Elongation factor G 1 (EF-G 1)
Length = 704
Score = 27.7 bits (60), Expect = 8.5
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +2
Query: 110 ERHFAFV------RMITGDEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEVVASYA 271
E HF V + I D+ S+ KF TY ++++ A+ +K + AS
Sbjct: 176 EEHFQGVVDLVKMKAIVWDDESQGVKF---TYEDIPANLVELAHEWREKMVEAAAEASEE 232
Query: 272 V-DLFTSDKNEITESKLRAALEKAGGAN 352
+ + + +D N +TE +++AAL K AN
Sbjct: 233 LLEKYLTDHNSLTEDEIKAALRKRTIAN 260
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,020,735
Number of Sequences: 369166
Number of extensions: 499623
Number of successful extensions: 1589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)