Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O03
(144 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1) 92 3e-19
sp|P08418|HSP70_SCHMA Heat shock 70 kDa homolog protein (HS... 91 6e-19
sp|P29843|HSP7A_DROME Heat shock 70 kDa protein cognate 1 (... 91 6e-19
sp|P34931|HS70L_HUMAN Heat shock 70 kDa protein 1L (Heat sh... 91 1e-18
sp|P08107|HSP71_HUMAN Heat shock 70 kDa protein 1 (HSP70.1)... 91 1e-18
sp|Q6S4N2|HS70B_PIG Heat shock 70 kDa protein 1B (HSP70.2) 91 1e-18
sp|Q27975|HS70A_BOVIN Heat shock 70 kDa protein 1A (HSP70.1) 91 1e-18
sp|Q27965|HS70B_BOVIN Heat shock 70 kDa protein 1B (HSP70.2) 91 1e-18
sp|Q7YQC6|HSP71_CANFA Heat shock 70 kDa protein 1 91 1e-18
sp|Q9U639|HSP7D_MANSE Heat shock 70 kDa protein cognate 4 (... 91 1e-18
>sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1)
Length = 639
Score = 92.4 bits (228), Expect = 3e-19
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLGIETAGGVMTALIKRNTTIPTKQTQ+FSTY+DNQPGVLIQV+EGE
Sbjct: 402 SLGIETAGGVMTALIKRNTTIPTKQTQVFSTYADNQPGVLIQVYEGE 448
>sp|P08418|HSP70_SCHMA Heat shock 70 kDa homolog protein (HSP70) (Major surface antigen)
Length = 637
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRNTTIPTKQTQ F+TYSDNQPGVLIQVFEGE
Sbjct: 398 SLGLETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVFEGE 444
>sp|P29843|HSP7A_DROME Heat shock 70 kDa protein cognate 1 (Heat shock 70 kDa protein 70C)
Length = 641
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLGIETAGGVMT LIKRNTTIPTKQTQIF+TY+DNQPGVLIQVFEGE
Sbjct: 400 SLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQPGVLIQVFEGE 446
>sp|P34931|HS70L_HUMAN Heat shock 70 kDa protein 1L (Heat shock 70 kDa protein 1-like)
(Heat shock 70 kDa protein 1-Hom) (HSP70-Hom)
Length = 641
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRN+TIPTKQTQIF+TYSDNQPGVLIQV+EGE
Sbjct: 402 SLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGE 448
>sp|P08107|HSP71_HUMAN Heat shock 70 kDa protein 1 (HSP70.1) (HSP70-1/HSP70-2)
Length = 641
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRN+TIPTKQTQIF+TYSDNQPGVLIQV+EGE
Sbjct: 400 SLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGE 446
>sp|Q6S4N2|HS70B_PIG Heat shock 70 kDa protein 1B (HSP70.2)
Length = 641
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRN+TIPTKQTQIF+TYSDNQPGVLIQV+EGE
Sbjct: 400 SLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGE 446
>sp|Q27975|HS70A_BOVIN Heat shock 70 kDa protein 1A (HSP70.1)
Length = 641
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRN+TIPTKQTQIF+TYSDNQPGVLIQV+EGE
Sbjct: 400 SLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGE 446
>sp|Q27965|HS70B_BOVIN Heat shock 70 kDa protein 1B (HSP70.2)
Length = 641
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRN+TIPTKQTQIF+TYSDNQPGVLIQV+EGE
Sbjct: 400 SLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGE 446
>sp|Q7YQC6|HSP71_CANFA Heat shock 70 kDa protein 1
Length = 641
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLG+ETAGGVMTALIKRN+TIPTKQTQIF+TYSDNQPGVLIQV+EGE
Sbjct: 400 SLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGE 446
>sp|Q9U639|HSP7D_MANSE Heat shock 70 kDa protein cognate 4 (Hsc 70-4)
Length = 652
Score = 90.5 bits (223), Expect = 1e-18
Identities = 44/47 (93%), Positives = 45/47 (95%)
Frame = +3
Query: 3 SLGIETAGGVMTALIKRNTTIPTKQTQIFSTYSDNQPGVLIQVFEGE 143
SLGIETAGGVMT LIKRNTTIPTKQTQ F+TYSDNQPGVLIQVFEGE
Sbjct: 400 SLGIETAGGVMTTLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVFEGE 446
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,112,714
Number of Sequences: 369166
Number of extensions: 185823
Number of successful extensions: 899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 68,354,980
effective HSP length: 21
effective length of database: 64,475,545
effective search space used: 1676364170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)