Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N22
(681 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q23381|MUTA_CAEEL Probable methylmalonyl-CoA mutase, mit... 246 3e-65
sp|Q8HXX1|MUTA_MACFA Methylmalonyl-CoA mutase, mitochondria... 246 5e-65
sp|P22033|MUTA_HUMAN Methylmalonyl-CoA mutase, mitochondria... 246 5e-65
sp|Q8MI68|MUTA_PIG Methylmalonyl-CoA mutase, mitochondrial ... 244 2e-64
sp|P16332|MUTA_MOUSE Methylmalonyl-CoA mutase, mitochondria... 231 2e-60
sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit... 216 6e-56
sp|Q05065|MUTB_STRCM Methylmalonyl-CoA mutase large subunit... 206 5e-53
sp|P65487|MUTB_MYCTU Probable methylmalonyl-CoA mutase larg... 201 1e-51
sp|P11653|MUTB_PROFR Methylmalonyl-CoA mutase large subunit... 200 3e-51
sp|P27253|SBM_ECOLI Sbm protein 193 3e-49
>sp|Q23381|MUTA_CAEEL Probable methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
Length = 744
Score = 246 bits (629), Expect = 3e-65
Identities = 119/181 (65%), Positives = 147/181 (81%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
AM + RH AV RLVSGAYKSEFG+ E++ VL++V+ F +GR+PRI++AK+GQDGH
Sbjct: 559 AMEKVFNRHAAVNRLVSGAYKSEFGETSEMSQVLERVKSFADRDGRQPRIMVAKMGQDGH 618
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIATGF+DLGFDVDVGPLF TP EA +QAVDADVHVIG SSLAAGH+TL+PQLI
Sbjct: 619 DRGAKVIATGFADLGFDVDVGPLFQTPLEAAQQAVDADVHVIGASSLAAGHLTLIPQLIG 678
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAIISNQNMAG 542
ELKK GR DI+VVAGGVIPPQDY+ L GV+ +FGPGTR+P A+++++ + +N A
Sbjct: 679 ELKKLGRPDILVVAGGVIPPQDYKELYDAGVALVFGPGTRLPACANQILEKLEANLPEAP 738
Query: 543 G 545
G
Sbjct: 739 G 739
>sp|Q8HXX1|MUTA_MACFA Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 750
Score = 246 bits (627), Expect = 5e-65
Identities = 115/172 (66%), Positives = 142/172 (82%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
A+ +G H A R+VSGAY+ EFG++KEI + +K+V F++ EGRRPR+L+AK+GQDGH
Sbjct: 568 ALKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREGRRPRLLVAKMGQDGH 627
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIATGF+DLGFDVD+GPLF TP+E +QAVDADVH +GVS+LAAGH TLVP+LI
Sbjct: 628 DRGAKVIATGFADLGFDVDIGPLFQTpreVAQQAVDADVHAVGVSTLAAGHKTLVPELIK 687
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAI 518
EL GR DI+V+ GGVIPPQDYEFL +VGVS +FGPGTRIP AA +V+D I
Sbjct: 688 ELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 739
>sp|P22033|MUTA_HUMAN Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 750
Score = 246 bits (627), Expect = 5e-65
Identities = 115/172 (66%), Positives = 142/172 (82%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
A+ +G H A R+VSGAY+ EFG++KEI + +K+V F++ EGRRPR+L+AK+GQDGH
Sbjct: 568 ALKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREGRRPRLLVAKMGQDGH 627
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIATGF+DLGFDVD+GPLF TP+E +QAVDADVH +GVS+LAAGH TLVP+LI
Sbjct: 628 DRGAKVIATGFADLGFDVDIGPLFQTpreVAQQAVDADVHAVGVSTLAAGHKTLVPELIK 687
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAI 518
EL GR DI+V+ GGVIPPQDYEFL +VGVS +FGPGTRIP AA +V+D I
Sbjct: 688 ELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 739
>sp|Q8MI68|MUTA_PIG Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 750
Score = 244 bits (622), Expect = 2e-64
Identities = 115/172 (66%), Positives = 142/172 (82%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
AM +G H A R+VSGAY+ EFG++KEI+ +K+V F++ EGRRPR+L+AK+GQDGH
Sbjct: 568 AMKKVFGEHKANDRMVSGAYRQEFGESKEISFAIKRVHKFMEREGRRPRLLVAKMGQDGH 627
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIATGF+DLGFDVD+GPLF TP+E +QAVDADVH +GVS+LAAGH TLVP+LI
Sbjct: 628 DRGAKVIATGFADLGFDVDIGPLFQTpreVAQQAVDADVHAVGVSTLAAGHKTLVPELIK 687
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAI 518
EL GR DI+V+ GGVIPPQDYEFL +VGVS +FGPGTRIP AA +V++ I
Sbjct: 688 ELSTLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLNDI 739
>sp|P16332|MUTA_MOUSE Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 748
Score = 231 bits (588), Expect = 2e-60
Identities = 110/172 (63%), Positives = 136/172 (79%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
A +G H A R+VSGAY+ EFG++KEI + +K+V F++ EGRR +L+AK+G+DGH
Sbjct: 566 AFKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVNKFMEREGRRLGLLVAKMGKDGH 625
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIATGF+DLGFDVD+GPLF TP+E AVDADVH +GVS+ AAGH TLVP+LI
Sbjct: 626 DRGAKVIATGFADLGFDVDIGPLFQTpreVAHDAVDADVHAVGVSTHAAGHKTLVPELIK 685
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAI 518
EL GR DI+V+ GGVIPPQDYEFL +VGVS +FGPGTRIP AA +V+D I
Sbjct: 686 ELTALGRPDILVMCGGVIPPQDYEFLYEVGVSNVFGPGTRIPRAAVQVLDDI 737
>sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit (MCM-alpha)
Length = 715
Score = 216 bits (549), Expect = 6e-56
Identities = 103/167 (61%), Positives = 133/167 (79%)
Frame = +3
Query: 21 GRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGHDRGGKV 200
GR+ AV R +SG Y SE G++K+ A + E F K EGR+PRI+IAK+GQDGHDRG KV
Sbjct: 547 GRYKAVIRTISGVYSSESGEDKDFAHAKELAEKFAKKEGRQPRIMIAKMGQDGHDRGAKV 606
Query: 201 IATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLIDELKKAG 380
+ATG++D GFDVD+GPLF TP+EA QAV+ DVHV+GVSSLAAGH TL+PQ+I EL+K G
Sbjct: 607 VATGYADCGFDVDMGPLFQTPEEAARQAVENDVHVMGVSSLAAGHKTLIPQVIAELEKLG 666
Query: 381 RSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAII 521
R DI+V AGGVIP QDY+FL + GV+ IFGPGT + +A+KV++ ++
Sbjct: 667 RPDILVTAGGVIPAQDYDFLYQAGVAAIFGPGTPVAYSAAKVLEILL 713
>sp|Q05065|MUTB_STRCM Methylmalonyl-CoA mutase large subunit (MCM-alpha)
Length = 733
Score = 206 bits (524), Expect = 5e-53
Identities = 100/175 (57%), Positives = 127/175 (72%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
A+ + YGRH R +SG Y++E G + + V+ F + EGRRPRIL+AK+GQDGH
Sbjct: 554 ALESVYGRHAGQIRTISGVYRTEAGQSPSVERTRALVDAFDEAEGRRPRILVAKMGQDGH 613
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIA+ F+DLGFDVDVGPLF TP E QAV+ADVH++GVSSLAAGH+TLVP L +
Sbjct: 614 DRGQKVIASAFADLGFDVDVGPLFQTPAEVARQAVEADVHIVGVSSLAAGHLTLVPALRE 673
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAIISN 527
EL GR DI++V GGVIPPQD E L + G + +F PGT IPDAA +V + ++
Sbjct: 674 ELAAEGRDDIMIVVGGVIPPQDVEALHEAGATAVFPPGTVIPDAAHDLVKRLAAD 728
>sp|P65487|MUTB_MYCTU Probable methylmalonyl-CoA mutase large subunit (MCM)
sp|P65488|MUTB_MYCBO Probable methylmalonyl-CoA mutase large subunit (MCM)
Length = 750
Score = 201 bits (512), Expect = 1e-51
Identities = 103/165 (62%), Positives = 120/165 (72%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
A+ YGRH A R +SG Y+ E G IAA + VE F + +GRRPRILIAK+GQDGH
Sbjct: 570 ALEKVYGRHRAEIRTISGVYRDEVGKAPNIAAATELVEKFAEADGRRPRILIAKMGQDGH 629
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIAT F+D+GFDVDVG LFSTP+E QA D DVHVIGVSSLAAGH+TLVP L D
Sbjct: 630 DRGQKVIATAFADIGFDVDVGSLFSTPEEVARQAADNDVHVIGVSSLAAGHLTLVPALRD 689
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAA 497
L + GR DI++V GGVIPP D++ L G + IF PGT I DAA
Sbjct: 690 ALAQVGRPDIMIVVGGVIPPGDFDELYAAGATAIFPPGTVIADAA 734
>sp|P11653|MUTB_PROFR Methylmalonyl-CoA mutase large subunit (MCM-alpha)
Length = 728
Score = 200 bits (509), Expect = 3e-51
Identities = 99/169 (58%), Positives = 124/169 (73%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQDGH 182
A+ +GR+ A R +SG Y E + E+ + VE+F + EGRRPRIL+AK+GQDGH
Sbjct: 551 ALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGH 610
Query: 183 DRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQLID 362
DRG KVIAT ++DLGFDVDVGPLF TP+E QAV+ADVHV+GVSSLA GH+TLVP L
Sbjct: 611 DRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK 670
Query: 363 ELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVV 509
EL K GR DI++ GGVIP QD++ LRK G EI+ PGT IP++A +V
Sbjct: 671 ELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLV 719
>sp|P27253|SBM_ECOLI Sbm protein
Length = 714
Score = 193 bits (491), Expect = 3e-49
Identities = 95/176 (53%), Positives = 129/176 (73%), Gaps = 4/176 (2%)
Frame = +3
Query: 3 AMVAAYGRHVAVGRLVSGAYKSEFGDNKEIA----AVLKKVEDFLKNEGRRPRILIAKLG 170
A+ A+ R++ + V+G + +++ A A++ + E FL + GRRPRILIAK+G
Sbjct: 534 ALEVAFDRYLVPSQCVTGVIAQSYHQSEKSASEFDAIVAQTEQFLADNGRRPRILIAKMG 593
Query: 171 QDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVP 350
QDGHDRG KVIA+ +SDLGFDVD+ P+FSTP+E AV+ DVHV+G SSLAAGH TL+P
Sbjct: 594 QDGHDRGAKVIASAYSDLGFDVDLSPMFSTPEEIARLAVENDVHVVGASSLAAGHKTLIP 653
Query: 351 QLIDELKKAGRSDIVVVAGGVIPPQDYEFLRKVGVSEIFGPGTRIPDAASKVVDAI 518
+L++ LKK GR DI VVAGGVIPPQDY FL++ GV+ I+GPGT + D+ V++ I
Sbjct: 654 ELVEALKKWGREDICVVAGGVIPPQDYAFLQERGVAAIYGPGTPMLDSVRDVLNLI 709
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,600,445
Number of Sequences: 369166
Number of extensions: 1270966
Number of successful extensions: 3933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3932
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)