Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N19
(297 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q46089|FTSK_CAMJE DNA translocase ftsK 28 4.9
sp|Q8K922|Y538_BUCAP Hypothetical UPF0265 protein BUsg538 28 6.4
sp|P57621|Y556_BUCAI Hypothetical UPF0265 protein BU556 28 6.4
sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 del... 28 8.4
>sp|Q46089|FTSK_CAMJE DNA translocase ftsK
Length = 946
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +1
Query: 76 EIFDLELPLRNDQIRLLRKKLSKTVRRKQNKLIERKIKR 192
+IF EL LR + I+ ++KL + + QN+++E K+K+
Sbjct: 310 KIFTKELELRENLIK--KEKLEQEYKAYQNEILENKVKQ 346
>sp|Q8K922|Y538_BUCAP Hypothetical UPF0265 protein BUsg538
Length = 101
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 40 FLIQFRRNNVI-REIFDLELPLRNDQIRLL 126
F+ +FRR N I REI D+E +R++Q R+L
Sbjct: 13 FVHKFRRKNKIKREISDIEKKIRDNQKRIL 42
>sp|P57621|Y556_BUCAI Hypothetical UPF0265 protein BU556
Length = 102
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 40 FLIQFRRNNVI-REIFDLELPLRNDQIRLL 126
F+ +FRR N I REI D+E +R++Q R+L
Sbjct: 14 FVHKFRRKNKIKREISDIEKKIRDNQKRIL 43
>sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 delta 1 subunit (Delta-adaptin 3)
(AP-3 complex delta subunit) (Delta-adaptin)
Length = 1153
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 94 LPLRNDQIRLL-----RKKLSKTVRRKQNKLIERKIKRNH 198
LP+ + ++L R+KL K RRK+ K E+K KR H
Sbjct: 718 LPMSDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRH 757
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,085,811
Number of Sequences: 369166
Number of extensions: 388989
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)