Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N17
(799 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-py... 31 3.4
sp|P35424|VN53_ROTHW Nonstructural RNA-binding protein 53 (... 30 9.9
sp|Q96PC3|AP1S3_HUMAN Adapter-related protein complex 1 sig... 30 9.9
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) (Penta-phosphate
guanosine-3'-pyrophosphohydrolase)
Length = 667
Score = 31.2 bits (69), Expect = 3.4
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Frame = +2
Query: 341 LVNYQRNSKRMRQIHQAFSIATKLYATVPIKEWDKISEKVE----PHIRSQSWAFDSMFF 508
L N R+ K I + F T + IK DK+ P R A D +
Sbjct: 123 LHNKTRSIKEANTISKMFFAMTHDIRIIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLST 182
Query: 509 LDLALLRGPLVKSKTYLKDPRLKSIYPKPYRDLLYASINQCNRDKNKKTLKNLIDI 676
R + KTYL+D K +YPK Y++ + +++ ++ KK K + I
Sbjct: 183 YVPIAERLGISSLKTYLEDLSFKHLYPKDYKE-IKNFLSETKIEREKKLYKGKLSI 237
>sp|P35424|VN53_ROTHW Nonstructural RNA-binding protein 53 (NS53) (NCVP2)
Length = 486
Score = 29.6 bits (65), Expect = 9.9
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 545 SKTYLKDPRLKSIYPKPY---RDLLYASINQCNRDKNKKTLKNLIDILNICSLKLNENFK 715
S T D R+K IY + R L+ +++N +R +K + + D+LN+C NE +K
Sbjct: 329 SYTVWNDFRVKKIYDNIFSFLRALVKSNVNIGHRSSQEKIYEYVEDVLNVCD---NEKWK 385
>sp|Q96PC3|AP1S3_HUMAN Adapter-related protein complex 1 sigma 1C subunit (Sigma-adaptin
1C) (Adaptor protein complex AP-1 sigma-1C subunit)
(Golgi adaptor HA1/AP1 adaptin sigma-1C subunit)
(Clathrin assembly protein complex 1 sigma-1C small
chain) (Sigma 1C subunit of AP-1 clathrin)
Length = 154
Score = 29.6 bits (65), Expect = 9.9
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Frame = +2
Query: 407 KLYATVPIKEWDKISEKVEPHIRSQSWAFDSMFFLDLALLRGPLVKSKTYLKDPRLKSIY 586
K Y T+P KE KI+ ++ + + L RG ++ +++ LK +Y
Sbjct: 18 KWYITLPDKERKKITREI----------------VQIILSRGH--RTSSFVDWKELKLVY 59
Query: 587 PKPYRDLLYASINQC----NRDKNKKTLK---NLIDIL-----NICSLKLNENFKECFDE 730
+ YAS+ C N+D TL+ +++L N+C L + NF++ +
Sbjct: 60 KR------YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFI 113
Query: 731 LPEMITG 751
L E I G
Sbjct: 114 LDEFIIG 120
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,530,449
Number of Sequences: 369166
Number of extensions: 1617026
Number of successful extensions: 3545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3545
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)