Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N09
(801 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3 179 1e-44
sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal 176 7e-44
sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (He... 176 7e-44
sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DE... 176 9e-44
sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal 176 9e-44
sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DE... 175 1e-43
sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal 175 1e-43
sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10 174 2e-43
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 156 7e-38
sp|P06634|DED1_YEAST Probable ATP-dependent RNA helicase DED1 151 2e-36
>sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3
Length = 697
Score = 179 bits (453), Expect = 1e-44
Identities = 100/173 (57%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL +L D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 472 LLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 531
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 532 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI 591
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNELKHIKQFRSQQKMA-PKRFGGKDYRQ 519
EA+QEVP WL E H R + K FG KDYRQ
Sbjct: 592 NITKDLLDLLVEAKQEVPSWLENMAYEQHHKSSSRGRSKSRFSGGFGAKDYRQ 644
>sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal
Length = 660
Score = 176 bits (446), Expect = 7e-44
Identities = 101/175 (57%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL IL SD L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 429 LLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 488
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NV+ VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 489 KSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM 548
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNELKHIK---QFRSQQKMAPKRFGGKDYRQ 519
EA+QEVP WL E + H K + RS+ FG +DYRQ
Sbjct: 549 NITKDLLDLLVEAKQEVPSWL-ENMAYEHHYKGGSRGRSKSNRFSGGFGARDYRQ 602
>sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2)
(DEAD-box, X isoform)
Length = 662
Score = 176 bits (446), Expect = 7e-44
Identities = 99/174 (56%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL +L D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 491 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNE--LKHIKQFRSQQKMAPKRFGGKDYRQ 519
EA+QEVP WL E K + RS+ FG +DYRQ
Sbjct: 551 NITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSSRFSGGFGARDYRQ 604
>sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3)
(mDEAD3) (Embryonic RNA helicase) (D1Pas1-related
sequence 2)
Length = 662
Score = 176 bits (445), Expect = 9e-44
Identities = 99/174 (56%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL +L D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 491 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNE--LKHIKQFRSQQKMAPKRFGGKDYRQ 519
EA+QEVP WL E K + RS+ FG +DYRQ
Sbjct: 551 NITKDLLDLLVEAKQEVPSWLENMAFEHHYKGSSRGRSKSSRFSGGFGARDYRQ 604
>sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal
Length = 658
Score = 176 bits (445), Expect = 9e-44
Identities = 97/172 (56%), Positives = 110/172 (63%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL +L D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 429 LLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 488
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NV+ VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 489 KSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM 548
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNELKHIKQFRSQQKMAPKRFGGKDYRQ 519
EA+QEVP WL E + R + K FG +DYRQ
Sbjct: 549 NITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKRFSGGFGARDYRQ 600
>sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DEAD-box RNA helicase DEAD2)
(mDEAD2) (D1Pas1-related sequence 1)
Length = 658
Score = 175 bits (443), Expect = 1e-43
Identities = 98/173 (56%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL +L D L L+FVETKKGA LENFL + TSIHGDR Q +RE AL F+ G
Sbjct: 430 LLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSG 489
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
PILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 490 RKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNL 549
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNELKHIKQFRSQQKMA-PKRFGGKDYRQ 519
EA+QEVP WL E + R + K FG +DYRQ
Sbjct: 550 NITKDLLDLLVEAKQEVPSWLESMAYEHHYKGSSRGRSKSRFSGGFGARDYRQ 602
>sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal
Length = 660
Score = 175 bits (443), Expect = 1e-43
Identities = 100/176 (56%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL IL +D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 429 LLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 488
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NV+ VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 489 KSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI 548
Query: 364 XXXXXXXXXXEEAQQEVPGWL----YEKLNELKHIKQFRSQQKMAPKRFGGKDYRQ 519
EA+QEVP WL YE ++ K + RS+ FG +DYRQ
Sbjct: 549 NITKDLLDLLVEAKQEVPSWLENMAYE--HQYKGGSRGRSKSNRFSGGFGARDYRQ 602
>sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10
Length = 660
Score = 174 bits (442), Expect = 2e-43
Identities = 98/173 (56%), Positives = 111/173 (64%), Gaps = 1/173 (0%)
Frame = +1
Query: 4 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 183
LL +L D L+L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 430 LLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 489
Query: 184 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXX 363
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G + SFFN+
Sbjct: 490 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 549
Query: 364 XXXXXXXXXXEEAQQEVPGWLYEKLNELKHIKQFRSQQKMA-PKRFGGKDYRQ 519
EA+QEVP WL E + R + K FG +DYRQ
Sbjct: 550 NITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQ 602
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1
Length = 636
Score = 156 bits (394), Expect = 7e-38
Identities = 81/148 (54%), Positives = 101/148 (68%)
Frame = +1
Query: 1 HLLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKD 180
+LL IL L + L LIFVETK+ A L ++LL +FP TSIHGDR Q ERE AL+ F+
Sbjct: 419 YLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRS 478
Query: 181 GSSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXX 360
G + I+VATAVA+RGLDIPNV VIN+DLP+DI++YVHRIGRTGR GN G++V+FFN
Sbjct: 479 GRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNN 538
Query: 361 XXXXXXXXXXXEEAQQEVPGWLYEKLNE 444
+EA QE P +L E
Sbjct: 539 KGIAKELIELLQEANQECPSFLIAMARE 566
>sp|P06634|DED1_YEAST Probable ATP-dependent RNA helicase DED1
Length = 604
Score = 151 bits (381), Expect = 2e-36
Identities = 77/141 (54%), Positives = 98/141 (69%)
Frame = +1
Query: 16 LTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPI 195
L + +D L LIFVETK+ A QL +FL+ ++F T+IHGDR Q ERE AL F+ G++ +
Sbjct: 393 LLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATL 452
Query: 196 LVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESVSFFNDXXXXXXX 375
LVATAVAARGLDIPNV VIN+DLPSD+++YVHRIGRTGR GN G + +FFN
Sbjct: 453 LVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512
Query: 376 XXXXXXEEAQQEVPGWLYEKL 438
EA QEVP +L + +
Sbjct: 513 GLHEILTEANQEVPSFLKDAM 533
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,764,023
Number of Sequences: 369166
Number of extensions: 1934908
Number of successful extensions: 5032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5001
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)