Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N07
(820 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 33 1.2
sp|P43624|YFM6_YEAST Hypothetical 14.0 kDa protein in HXK1 ... 32 2.1
sp|P96196|LEUD_AZOVI 3-isopropylmalate dehydratase small su... 30 6.1
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
Length = 678
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 11 CIVIFKLCDRDF--RSFRNGIMRSRNIMEKSFRGQYVGISNDVE 136
CI+ F +C +F + F NG+++++NI+ KSF + N+ E
Sbjct: 11 CILFFVVCTLNFSTKCFSNGLLKNQNILNKSFDSITGRLLNETE 54
>sp|P43624|YFM6_YEAST Hypothetical 14.0 kDa protein in HXK1 3'region
Length = 122
Score = 32.0 bits (71), Expect = 2.1
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = +2
Query: 365 AALPPVSDTFGMEICGAVPNIADAINLERVRGIEIPAGIRISQFPSK-KVFYDWCKSEYA 541
+ L P++D+ C +PN +++ V I + AGI SQF + +F WC + A
Sbjct: 18 SGLRPITDS-----CVVIPNFDNSVRSIIVVNILVFAGILYSQFRNTLSIFSLWCPNTRA 72
Query: 542 ARFRDCMCQLR------SFNTYIGTF 601
C C L S + IGTF
Sbjct: 73 VFLFICPCLLYFYQGIFSTDEQIGTF 98
>sp|P96196|LEUD_AZOVI 3-isopropylmalate dehydratase small subunit (Isopropylmalate
isomerase) (Alpha-IPM isomerase) (IPMI)
Length = 215
Score = 30.4 bits (67), Expect = 6.1
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 19/89 (21%)
Frame = +2
Query: 236 PVFSEQFFVNSSNAFIVPLRIPV------------NFGYNLTALLITETVTRENFAALPP 379
P F++ FF NS ++P+ +P GY LT L +TVTR + AL
Sbjct: 110 PSFADIFFNNSFKNGLLPIILPEAEVDELFRQCESTEGYRLTVDLAAQTVTRPDGKALSF 169
Query: 380 VSDTF-------GMEICGAVPNIADAINL 445
D F G++ G ADAI +
Sbjct: 170 EIDPFRKHCLLNGLDDIGLTLRDADAIRV 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,469,718
Number of Sequences: 369166
Number of extensions: 1513914
Number of successful extensions: 3433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3431
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)