Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N06
(235 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1... 31 0.78
sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 (... 30 1.7
sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1... 30 1.7
sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B... 29 3.9
sp|O74343|YH2X_SCHPO Hypothetical pseudouridine synthase C1... 28 5.1
sp|Q9ZER9|TRPE_BUCPS Anthranilate synthase component I 28 8.7
>sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1 (dsRNA adenosine deaminase)
(RNA editing deaminase 1) (RNA editing enzyme 1)
Length = 741
Score = 31.2 bits (69), Expect = 0.78
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 47 GYHLRNFDSLVLAKRSLQCFFYTQILLLLDKKRLHCKGEKIYFEIGKNGYVTLKYGCRLH 226
G L + + ++++RSL F YTQ+ L L+ K ++ F+ + G LK + H
Sbjct: 387 GLALNDCHAEIISRRSLLRFLYTQLELYLNNKD---DQKRSIFQKSERGGFRLKENVQFH 443
Query: 227 LYM 235
LY+
Sbjct: 444 LYI 446
>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 (dsRNA adenosine deaminase)
(RNA editing deaminase 1) (RNA editing enzyme 1)
Length = 711
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 47 GYHLRNFDSLVLAKRSLQCFFYTQILLLLDKKRLHCKGEKIYFEIGKNGYVTLKYGCRLH 226
G L + + ++++RSL F Y Q+ L L+ K +K F+ + G LK + H
Sbjct: 387 GLALNDCHAEIISRRSLLRFLYAQLELYLNNKE---DQKKSIFQKSERGGFRLKDTVQFH 443
Query: 227 LYM 235
LY+
Sbjct: 444 LYI 446
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 (dsRNA adenosine deaminase)
(RNA editing deaminase 1) (RNA editing enzyme 1)
Length = 711
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 47 GYHLRNFDSLVLAKRSLQCFFYTQILLLLDKKRLHCKGEKIYFEIGKNGYVTLKYGCRLH 226
G L + + ++++RSL F Y Q+ L L+ K +K F+ + G LK + H
Sbjct: 387 GLALNDCHAEIISRRSLLRFLYAQLELYLNNKE---DQKKSIFQKSERGGFRLKDTVQFH 443
Query: 227 LYM 235
LY+
Sbjct: 444 LYI 446
>sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase
B2) (RNA dependent adenosine deaminase 3) (RNA editing
deaminase 2) (RNA editing enzyme 2)
Length = 739
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 77 VLAKRSLQCFFYTQILLLLDKKRLHCKGEKIYFEIGKNGYVTLKYGCRLHLYM 235
V+A+R+ F YTQ+ L L K+R + I+ + + GY L+ HLY+
Sbjct: 435 VVARRAFLHFLYTQLELHLSKRREDSE-RSIFVRLKEGGY-RLRENILFHLYV 485
>sp|O74343|YH2X_SCHPO Hypothetical pseudouridine synthase C1A4.09 in chromosome II
Length = 680
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 116 QILLLLDKKRLHCKGEKIYFEIGKNGYVTLKY 211
Q L+L DK RL + + E+GK+ VTLK+
Sbjct: 612 QQLILTDKDRLENRSISVSSEVGKHTAVTLKF 643
>sp|Q9ZER9|TRPE_BUCPS Anthranilate synthase component I
Length = 520
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 56 LRNFDSLVLAKRSLQC----FFYTQILLLLDKKRLHC 154
+ NF+ L + R+ +C F+ + LL+LD K+ +C
Sbjct: 155 VNNFEKLPILNRNQKCPDLCFYLAETLLILDHKKKNC 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,282,406
Number of Sequences: 369166
Number of extensions: 443354
Number of successful extensions: 1170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)