Planarian EST Database


Dr_sW_028_N04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_N04
         (265 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24051|RS27L_RAT  40S ribosomal protein S27-like protein ...   117   1e-26
sp|Q71TY3|RS27_RAT  40S ribosomal protein S27 >gi|51316667|s...   117   1e-26
sp|P47904|RS27_XENLA  40S ribosomal protein S27                   117   1e-26
sp|P55833|RS27_HOMAM  40S ribosomal protein S27                   113   2e-25
sp|Q8L953|RS27D_ARATH  40S ribosomal protein S27-4                106   2e-23
sp|Q96564|RS27_HORVU  40S ribosomal protein S27 (Manganese e...   103   9e-23
sp|O74330|RS27_SCHPO  40S ribosomal protein S27                   103   1e-22
sp|O64650|RS27A_ARATH  40S ribosomal protein S27-1                100   8e-22
sp|Q9M2F1|RS27B_ARATH  40S ribosomal protein S27-2                100   1e-21
sp|P38711|RS27B_YEAST  40S ribosomal protein S27-B (YS20) (R...    96   3e-20
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein
 sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein
 sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein
          Length = 84

 Score =  117 bits (292), Expect = 1e-26
 Identities = 53/79 (67%), Positives = 59/79 (74%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D LHP            RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+  LCQ
Sbjct: 6   DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65

Query: 182 PTGGKARLMEGCSFRKKQN 238
           PTGGKARL EGCSFR+KQ+
Sbjct: 66  PTGGKARLTEGCSFRRKQH 84
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27
 sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27
 sp|P42677|RS27_HUMAN 40S ribosomal protein S27 (Metallopan-stimulin 1) (MPS-1)
          Length = 84

 Score =  117 bits (292), Expect = 1e-26
 Identities = 53/79 (67%), Positives = 59/79 (74%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D LHP            RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+  LCQ
Sbjct: 6   DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65

Query: 182 PTGGKARLMEGCSFRKKQN 238
           PTGGKARL EGCSFR+KQ+
Sbjct: 66  PTGGKARLTEGCSFRRKQH 84
>sp|P47904|RS27_XENLA 40S ribosomal protein S27
          Length = 84

 Score =  117 bits (292), Expect = 1e-26
 Identities = 53/79 (67%), Positives = 59/79 (74%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D LHP            RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+  LCQ
Sbjct: 6   DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65

Query: 182 PTGGKARLMEGCSFRKKQN 238
           PTGGKARL EGCSFR+KQ+
Sbjct: 66  PTGGKARLTEGCSFRRKQH 84
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27
          Length = 84

 Score =  113 bits (282), Expect = 2e-25
 Identities = 51/79 (64%), Positives = 56/79 (70%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D LHP            RLV  PNSYFMDVKCPGC KI+T+FSHA +VV C GC   LCQ
Sbjct: 6   DLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQ 65

Query: 182 PTGGKARLMEGCSFRKKQN 238
           PTGGKA+L +GCSFRKKQN
Sbjct: 66  PTGGKAKLTDGCSFRKKQN 84
>sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4
          Length = 84

 Score =  106 bits (264), Expect = 2e-23
 Identities = 48/77 (62%), Positives = 53/77 (68%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D LHP            RLV SPNS+FMDVKC GC  ITT+FSH+ +VV+C  C   LCQ
Sbjct: 8   DLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQ 67

Query: 182 PTGGKARLMEGCSFRKK 232
           PTGGKARL EGCSFRKK
Sbjct: 68  PTGGKARLQEGCSFRKK 84
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese efficiency related protein 1)
          Length = 86

 Score =  103 bits (258), Expect = 9e-23
 Identities = 47/77 (61%), Positives = 54/77 (70%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D L+P            RLV SPNS+FMDVKC GC  ITT+FSH+ +VV+C GC   LCQ
Sbjct: 8   DLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67

Query: 182 PTGGKARLMEGCSFRKK 232
           PTGGKARL EGCSFR+K
Sbjct: 68  PTGGKARLTEGCSFRRK 84
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
          Length = 83

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/77 (59%), Positives = 53/77 (68%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D L+P            +LV  P S+FMDVKCPGC  ITT+FSHA +VV+C  C   LCQ
Sbjct: 6   DLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQ 65

Query: 182 PTGGKARLMEGCSFRKK 232
           PTGGKARLMEGCSFR+K
Sbjct: 66  PTGGKARLMEGCSFRRK 82
>sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1
          Length = 84

 Score =  100 bits (250), Expect = 8e-22
 Identities = 46/77 (59%), Positives = 52/77 (67%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D L+P            RLV SPNS+FMDVKC GC  ITT+FSH+ +VVMC  C   LC 
Sbjct: 8   DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCT 67

Query: 182 PTGGKARLMEGCSFRKK 232
           PTGGKA+L EGCSFRKK
Sbjct: 68  PTGGKAKLTEGCSFRKK 84
>sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2
          Length = 86

 Score =  100 bits (249), Expect = 1e-21
 Identities = 45/77 (58%), Positives = 53/77 (68%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D L+P            RLV SPNS+FMDVKC GC  ITT+FSH+ +VV+C  C   LCQ
Sbjct: 8   DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQ 67

Query: 182 PTGGKARLMEGCSFRKK 232
           PTGGKA+L EGCSFR+K
Sbjct: 68  PTGGKAKLTEGCSFRRK 84
>sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (RP61)
          Length = 82

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 43/77 (55%), Positives = 49/77 (63%)
 Frame = +2

Query: 2   DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 181
           D LHP             LV  P SYF+DVKCPGCL ITT+FSHA + V C  C+  LC 
Sbjct: 6   DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCT 65

Query: 182 PTGGKARLMEGCSFRKK 232
           PTGGKA+L EG SFR+K
Sbjct: 66  PTGGKAKLSEGTSFRRK 82
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,293,741
Number of Sequences: 369166
Number of extensions: 492376
Number of successful extensions: 964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)