Planarian EST Database

Dr_sW_028_M16

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_M16
         (291 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58192|TF2B_METJA  Transcription initiation factor IIB (T...    28   5.0  

>sp|Q58192|TF2B_METJA Transcription initiation factor IIB (TFIIB) [Contains: Endonuclease
           Mja Tfb (Mja Tfb intein) (Mja TFIIB intein)]
          Length = 673

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 12  YWDNNIEKNYRLDYCQISVDKLANGFSSTSPYTSDYK-PNMEPFISGFTGY 161
           Y +  +EK    D+  + + ++ N    TS Y  D   PN E F++GF G+
Sbjct: 381 YTNRKLEKLINSDFIFLKIKEI-NKVEPTSGYAYDLTVPNAENFVAGFGGF 430

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,562,242
Number of Sequences: 369166
Number of extensions: 545258
Number of successful extensions: 1190
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)