Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_M14
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10669|SUR2_CAEEL Protein sur-2 58 3e-08
sp|Q9ULK4|CRSP3_HUMAN CRSP complex subunit 3 (Cofactor requ... 56 1e-07
sp|P57441|SYN_BUCAI Asparaginyl-tRNA synthetase (Asparagine... 38 0.043
sp|Q8FNF4|HRCA_COREF Heat-inducible transcription repressor... 32 2.4
sp|Q8NNB3|HRCA_CORGL Heat-inducible transcription repressor... 31 4.0
sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-relat... 30 6.9
sp|Q8ZJN9|COAD_YERPE Phosphopantetheine adenylyltransferase... 30 9.0
>sp|Q10669|SUR2_CAEEL Protein sur-2
Length = 1587
Score = 58.2 bits (139), Expect = 3e-08
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 11/207 (5%)
Frame = +2
Query: 86 HEKLPEI----LVNS-GSKNQIILPQYYNHLLLRLIPVFELIISSLVHFPQVAIKMS-NF 247
H+ PE LV S S + + +P YY L+ RL+P+ + + V Q K++
Sbjct: 979 HDAFPEFEACELVRSYDSSSNVHMPTYYGCLIERLLPIMDQYLH--VALEQQGYKLNPQI 1036
Query: 248 FKIASQLFKFHSYPLYFCYSLIRSQ--IMWGPENRQLLQFIIYHILQEHQSSGRYFTTTG 421
+ S L+KFH+ P++F YS++ + +M GP+ + + I + H
Sbjct: 1037 LQSVSMLYKFHAMPIHFMYSVLFTSHGLMSGPDAKSFVLAFATQIEECH----------- 1085
Query: 422 WRLLTCSVSDIDHDKKTAE-ICRELMSKIHSVFLTFGKIGIPY--KNWRQDQSSSAQSHV 592
LT + +H K + E + EL+ ++ S L F P+ K+W+ + S +
Sbjct: 1086 ---LTEAFEKFNHQKSSREQLIMELIDRM-SASLDFILTPPPFVAKDWKIAELSPG-AQT 1140
Query: 593 VYAAVIELMLCGSKPQIVVDSIVTVCQ 673
+Y A IELM P+ +V +++ V Q
Sbjct: 1141 LYLACIELMASPHSPETLVAAMINVMQ 1167
>sp|Q9ULK4|CRSP3_HUMAN CRSP complex subunit 3 (Cofactor required for Sp1 transcriptional
activation subunit 3) (Transcriptional coactivator
CRSP130) (Vitamin D3 receptor-interacting protein complex
130 kDa component) (DRIP130) (Activator-recruited
cofactor 130 kDa component) (ARC130)
Length = 1368
Score = 56.2 bits (134), Expect = 1e-07
Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 17/221 (7%)
Frame = +2
Query: 56 DNWCQIHFALHEKLPEILVNSGSKNQI---------ILPQYYNHLLLRLIPVFELIISSL 208
++W H H+K PE L G Q+ LP Y+ ++ LR +PVF+++I
Sbjct: 915 NDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFGNVCLRFLPVFDIVIHRF 974
Query: 209 VHFPQVAIKMSNFFKIASQLFKFHSYPLYFCYSLIRSQIMWGPENRQLLQFIIYHI---L 379
+ V+ + L+KFH P+ + Y+ + M + L + +++ I L
Sbjct: 975 LELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMHLRDRAFLKRKLVHAIIGSL 1034
Query: 380 QEHQSSGRYFTTTGWRLLTCSVSDIDHDKKTAE---ICRELMSKIHSVFLTFGKIGIPYK 550
++++ G + T L C+++ + + + CR L+ ++ V GK P+
Sbjct: 1035 KDNRPQGWCLSDT---YLKCAMNAREENPWVPDDTYYCR-LIGRL--VDTMAGKSPGPFP 1088
Query: 551 N--WRQDQSSSAQSHVVYAAVIELMLCGSKPQIVVDSIVTV 667
N WR ++ + +H ++ +ELM + V ++++ V
Sbjct: 1089 NCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNV 1129
>sp|P57441|SYN_BUCAI Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
Length = 466
Score = 37.7 bits (86), Expect = 0.043
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 632 KPQIVVDSIVTVCQEQRGGSKFQEYINIFGLYDGFIFKGISSICNSSIFKNYY*SGCEMS 811
K I+V+S++TVC R + + +YDG F I I N+++ NYY ++
Sbjct: 11 KDDIIVNSLITVCGWVRNRRSSKSGFSFITIYDGSCFNSIQVIANNTL-PNYYKEILHLT 69
Query: 812 RICSII 829
CS++
Sbjct: 70 TGCSVM 75
>sp|Q8FNF4|HRCA_COREF Heat-inducible transcription repressor hrcA
Length = 342
Score = 32.0 bits (71), Expect = 2.4
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 371 HILQEHQSSGRYFTTTGWRLLTCSVSDI 454
+I+QEH SSGR T G+RL S+ DI
Sbjct: 57 YIVQEHASSGRVPTEKGYRLFVDSIHDI 84
>sp|Q8NNB3|HRCA_CORGL Heat-inducible transcription repressor hrcA
Length = 341
Score = 31.2 bits (69), Expect = 4.0
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 374 ILQEHQSSGRYFTTTGWRLLTCSVSDI 454
I+QEH SSGR T G+RL S+ DI
Sbjct: 57 IVQEHASSGRVPTERGYRLFVDSIHDI 83
>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 precursor (LRP)
(Alpha-2-macroglobulin receptor) (A2MR)
Length = 4543
Score = 30.4 bits (67), Expect = 6.9
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +2
Query: 563 DQSSSAQSHVVYAAVIELMLCGSKPQIVVDSIVTVCQEQRGGSKFQEYINIFGLYDGFIF 742
D+ S + H Y + +CG + Q + T C +RG K + + + + F
Sbjct: 3770 DEKSCSHEHKSYDCMTNTTMCGDEAQCIQAQSSTYCTCRRGFQKVPDKNSCQDVNECLRF 3829
Query: 743 KGISSICNSS 772
S +CN++
Sbjct: 3830 GTCSQLCNNT 3839
>sp|Q8ZJN9|COAD_YERPE Phosphopantetheine adenylyltransferase (Pantetheine-phosphate
adenylyltransferase) (PPAT) (Dephospho-CoA
pyrophosphorylase)
Length = 159
Score = 30.0 bits (66), Expect = 9.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 440 SVSDIDHDKKTAEICRELMSKIHSVFLTFGKIGIPYKNWRQDQSS 574
SVSD +++ + A + R LM K+ SVFL IP + W SS
Sbjct: 92 SVSDFEYEWQLANMNRHLMPKLESVFL------IPSEKWSFISSS 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,530,964
Number of Sequences: 369166
Number of extensions: 2021219
Number of successful extensions: 4443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4437
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)