Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_M12-2
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H0Q0|FA49A_HUMAN Protein FAM49A 58 8e-09
sp|Q8BHZ0|FA49A_MOUSE Protein FAM49A 58 8e-09
sp|Q9NUQ9|FA49B_HUMAN Protein FAM49B (L1) 56 2e-08
sp|Q921M7|FA49B_MOUSE Protein FAM49B 56 2e-08
sp|P15604|YM02_PARTE Hypothetical 23.3 kDa protein (ORF2) 30 1.3
>sp|Q9H0Q0|FA49A_HUMAN Protein FAM49A
Length = 323
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +2
Query: 68 NIFIDFENCHPTEGKNPFYNLITPKLERSKDILQR*ENYKGAAIAIKEAFSIYTNEDLQK 247
+ F+DFEN PTEG+ +N I+ L+ S+ IL + YKGA I++A + LQ+
Sbjct: 17 HFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIQLQE 76
Query: 248 KAWKGGCTFNYRIK 289
KAW C R+K
Sbjct: 77 KAWNAVCPLVVRLK 90
>sp|Q8BHZ0|FA49A_MOUSE Protein FAM49A
Length = 323
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +2
Query: 68 NIFIDFENCHPTEGKNPFYNLITPKLERSKDILQR*ENYKGAAIAIKEAFSIYTNEDLQK 247
+ F+DFEN PTEG+ +N I+ L+ S+ IL + YKGA I++A + LQ+
Sbjct: 17 HFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAGPEIRDAIQNPNDIQLQE 76
Query: 248 KAWKGGCTFNYRIK 289
KAW C R+K
Sbjct: 77 KAWNAVCPLVVRLK 90
>sp|Q9NUQ9|FA49B_HUMAN Protein FAM49B (L1)
Length = 324
Score = 56.2 bits (134), Expect = 2e-08
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +2
Query: 68 NIFIDFENCHPTEGKNPFYNLITPKLERSKDILQR*ENYKGAAIAIKEAFSIYTNEDLQK 247
N F+DFEN PTE + YN + L+ ++ IL+ ++Y+GA I+EA +E LQ+
Sbjct: 18 NFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQE 77
Query: 248 KAW 256
KAW
Sbjct: 78 KAW 80
>sp|Q921M7|FA49B_MOUSE Protein FAM49B
Length = 324
Score = 56.2 bits (134), Expect = 2e-08
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +2
Query: 68 NIFIDFENCHPTEGKNPFYNLITPKLERSKDILQR*ENYKGAAIAIKEAFSIYTNEDLQK 247
N F+DFEN PTE + YN + L+ ++ IL+ ++Y+GA I+EA +E LQ+
Sbjct: 18 NFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQE 77
Query: 248 KAW 256
KAW
Sbjct: 78 KAW 80
>sp|P15604|YM02_PARTE Hypothetical 23.3 kDa protein (ORF2)
Length = 196
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 217 KRLFDSNSCTFIILLTL*NIFGSF*FWSNEIIKGVFPLSWVAV 89
K+ F +NS F+I L +F + F+SN + F L VAV
Sbjct: 115 KQFFFNNSLDFLIALVFLTLFSTLIFFSNNLFAFFFTLELVAV 157
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,695,632
Number of Sequences: 369166
Number of extensions: 754316
Number of successful extensions: 1535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)