Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L19
(628 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 361 e-100
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 361 e-100
sp|P02554|TBB_PIG Tubulin beta chain 361 e-100
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 361 e-100
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 361 e-100
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 360 2e-99
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 360 2e-99
sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 359 3e-99
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 359 3e-99
sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin) 359 3e-99
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 361 bits (927), Expect = e-100
Identities = 175/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 361 bits (927), Expect = e-100
Identities = 175/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 361 bits (927), Expect = e-100
Identities = 175/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 361 bits (927), Expect = e-100
Identities = 175/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 361 bits (927), Expect = e-100
Identities = 175/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 97 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 156
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 157 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 216
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 217 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 275
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 360 bits (924), Expect = 2e-99
Identities = 174/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 360 bits (924), Expect = 2e-99
Identities = 174/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 359 bits (922), Expect = 3e-99
Identities = 173/179 (96%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLN+QNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 359 bits (922), Expect = 3e-99
Identities = 174/179 (97%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMS+TFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 372 TAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 359 bits (922), Expect = 3e-99
Identities = 173/179 (96%), Positives = 178/179 (99%)
Frame = +2
Query: 2 KLADNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 181
KLA NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYL 311
Query: 182 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNS 361
TVAA+FRGRMSMKEVDEQMLN+QNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNS
Sbjct: 312 TVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Query: 362 TAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 538
TAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,038,327
Number of Sequences: 369166
Number of extensions: 1284283
Number of successful extensions: 3747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)