Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L12
(237 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8H6Q0|DEF2_PETHY Floral defensin-like protein 2 precurs... 29 3.9
sp|O70326|GREM1_MOUSE Gremlin-1 precursor (Cysteine knot su... 28 6.6
sp|Q8WNY1|GREM1_MACMU Gremlin-1 precursor >gi|62510668|sp|O... 28 6.6
sp|O73755|GREM1_CHICK Gremlin-1 precursor 28 6.6
sp|O35793|GREM1_RAT Gremlin-1 precursor (Cysteine knot supe... 28 6.6
sp|O88508|DNM3A_MOUSE DNA (cytosine-5)-methyltransferase 3A... 28 6.6
sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A... 28 6.6
>sp|Q8H6Q0|DEF2_PETHY Floral defensin-like protein 2 precursor (PhD2)
Length = 101
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +1
Query: 37 SEAGRCRDKCR------LNQEICIRACNLNRPPNRFCFGNCVRNNSRC 162
+EAG C+ +C +N+ C++ C P +F G+C + RC
Sbjct: 23 TEAGTCKAECPTWEGICINKAPCVKCCKAQ--PEKFTDGHCSKILRRC 68
>sp|O70326|GREM1_MOUSE Gremlin-1 precursor (Cysteine knot superfamily 1, BMP antagonist 1)
(Down-regulated in Mos-transformed cells protein)
Length = 184
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +1
Query: 55 RDKCR---LNQEICIRACNLNRPPNRFCFGNC 141
RD C+ L Q I CN NRFC+G C
Sbjct: 91 RDWCKTQPLKQTIHEEGCNSRTIINRFCYGQC 122
>sp|Q8WNY1|GREM1_MACMU Gremlin-1 precursor
sp|O60565|GREM1_HUMAN Gremlin-1 precursor (Cysteine knot superfamily 1, BMP antagonist 1)
(Proliferation-inducing gene 2 protein) (Increased in
high glucose-2 protein) (IHG-2) (Down-regulated in
Mos-transformed cells protein)
Length = 184
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +1
Query: 55 RDKCR---LNQEICIRACNLNRPPNRFCFGNC 141
RD C+ L Q I CN NRFC+G C
Sbjct: 91 RDWCKTQPLKQTIHEEGCNSRTIINRFCYGQC 122
>sp|O73755|GREM1_CHICK Gremlin-1 precursor
Length = 184
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +1
Query: 55 RDKCR---LNQEICIRACNLNRPPNRFCFGNC 141
RD C+ L Q I CN NRFC+G C
Sbjct: 91 RDWCKTQPLKQTIHEEGCNSRTIINRFCYGQC 122
>sp|O35793|GREM1_RAT Gremlin-1 precursor (Cysteine knot superfamily 1, BMP antagonist 1)
(Down-regulated in Mos-transformed cells protein)
Length = 184
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +1
Query: 55 RDKCR---LNQEICIRACNLNRPPNRFCFGNC 141
RD C+ L Q I CN NRFC+G C
Sbjct: 91 RDWCKTQPLKQTIHEEGCNSRTIINRFCYGQC 122
>sp|O88508|DNM3A_MOUSE DNA (cytosine-5)-methyltransferase 3A (Dnmt3a) (DNA
methyltransferase MmuIIIA) (DNA MTase MmuIIIA)
(M.MmuIIIA)
Length = 908
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 55 RDKCRLNQEICIRACNLNRPPNRFCF-GNCVRNNSRCFLLC 174
R KCR ++ICI +LN F G +N CFL C
Sbjct: 480 RQKCRNIEDICISCGSLNVTLEHPLFIGGMCQNCKNCFLEC 520
>sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A (Dnmt3a) (DNA
methyltransferase HsaIIIA) (DNA MTase HsaIIIA)
(M.HsaIIIA)
Length = 909
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 55 RDKCRLNQEICIRACNLNRPPNRFCF-GNCVRNNSRCFLLC 174
R KCR ++ICI +LN F G +N CFL C
Sbjct: 481 RQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLEC 521
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,538,429
Number of Sequences: 369166
Number of extensions: 352457
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)