Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L08
(691 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) ... 102 7e-22
sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) ... 102 7e-22
sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (H... 102 7e-22
sp|Q09390|HG12_CAEEL High mobility group protein 1.2 102 7e-22
sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (H... 102 1e-21
sp|P52925|HMG2_RAT High mobility group protein 2 (HMG-2) 101 2e-21
sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2) 101 2e-21
sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dors... 101 2e-21
sp|P30681|HMG2_MOUSE High mobility group protein 2 (HMG-2) 100 3e-21
sp|P17741|HMG2_PIG High mobility group protein 2 (HMG-2) 100 3e-21
>sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 102 bits (255), Expect = 7e-22
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXX 165
HP+ +F+EFS KC+E+WK+M +E+ +FE++A E +
Sbjct: 31 HPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 340 DKERYEKEMEQFRA 381
KE+YEK++ +RA
Sbjct: 151 LKEKYEKDIAAYRA 164
>sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
sp|Q6YKA4|HMG1_CANFA High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 102 bits (255), Expect = 7e-22
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXX 165
HP+ +F+EFS KC+E+WK+M +E+ +FE++A E +
Sbjct: 31 HPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 340 DKERYEKEMEQFRA 381
KE+YEK++ +RA
Sbjct: 151 LKEKYEKDIAAYRA 164
>sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (High mobility group protein
B1) (Amphoterin) (Heparin-binding protein p30)
sp|P63158|HMG1_MOUSE High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 102 bits (255), Expect = 7e-22
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXX 165
HP+ +F+EFS KC+E+WK+M +E+ +FE++A E +
Sbjct: 31 HPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 340 DKERYEKEMEQFRA 381
KE+YEK++ +RA
Sbjct: 151 LKEKYEKDIAAYRA 164
>sp|Q09390|HG12_CAEEL High mobility group protein 1.2
Length = 235
Score = 102 bits (255), Expect = 7e-22
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ- 177
+P E TE S KC+EKWK+M +E++RF ELA ++ + +
Sbjct: 67 YPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRK 126
Query: 178 --------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEAC--SDRDRYEK 327
PKRA SAFF++ ++RP+++ HPDW+V +VA+ELG++W+ +D YE+
Sbjct: 127 RAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQ 186
Query: 328 MATLDKERYEKEMEQFRA 381
A DK+RY EM ++A
Sbjct: 187 KAQADKDRYADEMRNYKA 204
>sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 102 bits (254), Expect = 1e-21
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXX 165
HP+ +F+EFS KC+E+WK+M +E+ +FE++A E +
Sbjct: 31 HPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAK 150
Query: 340 DKERYEKEMEQFRA 381
KE+YEK++ +RA
Sbjct: 151 LKEKYEKDIAAYRA 164
>sp|P52925|HMG2_RAT High mobility group protein 2 (HMG-2)
Length = 210
Score = 101 bits (252), Expect = 2e-21
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXX 165
HP+ +F EFS KC+E+WK+M +E+ +FE+LA + +
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 340 DKERYEKEMEQFRA 381
KE+YEK++ +RA
Sbjct: 151 LKEKYEKDIAAYRA 164
>sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2)
Length = 209
Score = 101 bits (251), Expect = 2e-21
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXX 165
HP+ +F EFS KC+E+WK+M +E+ +FE++A + +
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 340 DKERYEKEMEQFRA-GNFVAGE 402
KE+YEK++ +RA G AG+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGK 172
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dorsal switch protein 1)
Length = 393
Score = 101 bits (251), Expect = 2e-21
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 13/145 (8%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXX--- 171
HP+E F EFS KCAE+WK+M +E+KRF E+A ++
Sbjct: 201 HPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGK 260
Query: 172 --------GQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRY 321
PKR+ SAFF+FC++ R KV+ +P++ V ++A+ELGR W + +Y
Sbjct: 261 KRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKY 320
Query: 322 EKMATLDKERYEKEMEQFRAGNFVA 396
E MA DK RYE+EM +++ +A
Sbjct: 321 ESMAERDKARYEREMTEYKTSGKIA 345
Score = 48.9 bits (115), Expect = 1e-05
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Frame = +1
Query: 175 QPKRAWSAFFYFCDERRPKVRKEHPDWRV--AEVARELGRLWEACSDRD--RYEKMATLD 342
+P+ +A+ YF R + +K+HPD V AE +R+ W+ D++ R+ +MA D
Sbjct: 178 KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKD 237
Query: 343 KERYEKEMEQF 375
K+RYE EM+ +
Sbjct: 238 KQRYEAEMQNY 248
>sp|P30681|HMG2_MOUSE High mobility group protein 2 (HMG-2)
Length = 210
Score = 100 bits (250), Expect = 3e-21
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXX 165
HP+ +F EFS KC+E+WK+M +E+ +FE+LA + +
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A
Sbjct: 91 DPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 340 DKERYEKEMEQFRA-GNFVAGE 402
KE+YEK++ +RA G AG+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGK 172
>sp|P17741|HMG2_PIG High mobility group protein 2 (HMG-2)
Length = 210
Score = 100 bits (250), Expect = 3e-21
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Frame = +1
Query: 1 HPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXX 165
HP+ +F EFS KC+E+WK+M +E+ +FE++A + +
Sbjct: 31 HPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKK 90
Query: 166 XXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATL 339
PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 340 DKERYEKEMEQFRA 381
KE+YEK++ +RA
Sbjct: 151 LKEKYEKDIAAYRA 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,748,399
Number of Sequences: 369166
Number of extensions: 1059279
Number of successful extensions: 3930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3850
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)