Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L07
(866 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6E3D2|CPB3_CAEJA Cytoplasmic polyadenylation element bi... 217 4e-56
sp|Q6E3D4|CPB3_CAERE Cytoplasmic polyadenylation element bi... 209 1e-53
sp|Q6E3D5|CPB3_CAEBR Cytoplasmic polyadenylation element bi... 209 1e-53
sp|O01835|CPB3_CAEEL Cytoplasmic polyadenylation element bi... 207 4e-53
sp|Q6E3C9|CPB1_CAERE Cytoplasmic polyadenylation element bi... 150 4e-36
sp|Q6E3D0|CBP1_CAEBR Cytoplasmic polyadenylation element bi... 149 7e-36
sp|Q6E3C7|CPB1_CAEJA Cytoplasmic polyadenylation element bi... 149 1e-35
sp|Q03571|CPB1_CAEEL Cytoplasmic polyadenylation element bi... 147 5e-35
sp|Q6E3F3|CPB2_CAEBR Cytoplasmic polyadenylation element bi... 115 2e-25
sp|Q6E3F2|CPB2_CAERE Cytoplasmic polyadenylation element bi... 114 3e-25
>sp|Q6E3D2|CPB3_CAEJA Cytoplasmic polyadenylation element binding protein 3
Length = 734
Score = 217 bits (552), Expect = 4e-56
Identities = 113/267 (42%), Positives = 162/267 (60%), Gaps = 21/267 (7%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQKDL------------NSPIRHNS-- 157
+SRK+F+GGVPWD TE+ L +F +FG +V +P ++ N+ +R +S
Sbjct: 290 FSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGQEARYRSGQSNVMPPNANLRAHSKY 349
Query: 158 SSNSLKGYCYIIFESEDSVSRLLNQCNKNESNGGE-FFKISSPKFRS---KDVQVIPWIT 325
S + GY Y+IFE E +V+ LL++C++ GE +FKI + + +S + VQ+IPW+T
Sbjct: 350 SGQATTGYVYMIFEDERAVAALLHECSQEIGGAGEWYFKIRAQRSKSTEIRQVQIIPWVT 409
Query: 326 QDSQYCRLGSQKP---DSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTDKYKYP 496
DS YC S + K+TVFVGALHGMMTA L ++M + F V LDTDK+KYP
Sbjct: 410 SDSLYCHEESILEVGIEPKRTVFVGALHGMMTAQVLHSIMEDCFGCVECVQLDTDKFKYP 469
Query: 497 IGSGRVTFSSQKSYMRAVTANFIHVKTGKFSKTIQIDPYLEDSMCNNCFQSPGIYFCRSF 676
IGSGRVTF +Y +A+ ++HV T KF K +QIDP+LE + C C P FCR+
Sbjct: 470 IGSGRVTFREHGAYFKAIEIGYLHVHTSKFRKRVQIDPFLESTSCMVCNLEPAHCFCRNR 529
Query: 677 ECFRYFCSGCWQVWHNRCETLFNHKPL 757
CF+Y+C CW + H + + H P+
Sbjct: 530 NCFKYYCHSCWSIDHGKDTVVDVHVPV 556
>sp|Q6E3D4|CPB3_CAERE Cytoplasmic polyadenylation element binding protein 3
Length = 766
Score = 209 bits (531), Expect = 1e-53
Identities = 108/253 (42%), Positives = 153/253 (60%), Gaps = 19/253 (7%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQKD------------LNSPIRHNSSS 163
+SRK+F+GGVPWD TE+ L +F +FG +V +P + LN + +
Sbjct: 306 FSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGHEARYRNAQSNTASLNLRNQSKYTG 365
Query: 164 NSLKGYCYIIFESEDSVSRLLNQCNKNESNGGE-FFKISSPKFRS---KDVQVIPWITQD 331
+ GY Y+IFE E +V+ LL++C++ GE +FKI + + +S + VQ+IPW+T D
Sbjct: 366 QAATGYVYMIFEDERAVASLLHECSQEIGGAGEWYFKIRAQRSKSTEIRQVQIIPWVTSD 425
Query: 332 SQYCRLGSQKP---DSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTDKYKYPIG 502
S +C S + K+TVFVGALHGMMTA L ++M + F +V LDTDK+KYPIG
Sbjct: 426 SMFCEDESLLEVGIEPKRTVFVGALHGMMTAQVLHSIMEDCFGSVECVQLDTDKFKYPIG 485
Query: 503 SGRVTFSSQKSYMRAVTANFIHVKTGKFSKTIQIDPYLEDSMCNNCFQSPGIYFCRSFEC 682
SGRVTF +Y +A+ ++HV T KF K +QIDP+LE + C C FCR+ C
Sbjct: 486 SGRVTFREHGAYFKAIEMGYLHVHTSKFRKRVQIDPFLESTNCMVCTTELAHCFCRNRNC 545
Query: 683 FRYFCSGCWQVWH 721
F+Y+C CW V H
Sbjct: 546 FKYYCHTCWAVDH 558
>sp|Q6E3D5|CPB3_CAEBR Cytoplasmic polyadenylation element binding protein 3
Length = 753
Score = 209 bits (531), Expect = 1e-53
Identities = 109/266 (40%), Positives = 159/266 (59%), Gaps = 20/266 (7%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQKDLN-----------SPIRHNS--S 160
+SRK+F+GGVPWD TE+ L +F +FG +V +P ++ + +R+ S +
Sbjct: 294 FSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGQEARYRSGQSNIAPLTNLRNQSKYA 353
Query: 161 SNSLKGYCYIIFESEDSVSRLLNQCNKNESNGGE-FFKISSPKFRS---KDVQVIPWITQ 328
+ GY Y+IFE E +V+ LL++C++ GE +FKI + + +S + VQ+IPW+T
Sbjct: 354 GQAATGYVYMIFEDERAVASLLHECSQEIGGAGEWYFKIRAQRSKSTEIRQVQIIPWVTS 413
Query: 329 DSQYCR---LGSQKPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTDKYKYPI 499
DS +C L + K+TVFVGALHGMMTA L +M + F +V LDTDK+KYPI
Sbjct: 414 DSMFCEDESLLETGIEPKRTVFVGALHGMMTAQVLHWIMEDCFGSVECVQLDTDKFKYPI 473
Query: 500 GSGRVTFSSQKSYMRAVTANFIHVKTGKFSKTIQIDPYLEDSMCNNCFQSPGIYFCRSFE 679
GSGRVTF +Y +A+ ++HV T KF K +QIDP+LE + C C FCR+
Sbjct: 474 GSGRVTFREHGAYFKAIEMGYLHVHTSKFRKRVQIDPFLESTSCMVCTTESAQCFCRNRN 533
Query: 680 CFRYFCSGCWQVWHNRCETLFNHKPL 757
CF+Y+C CW + H + H P+
Sbjct: 534 CFKYYCHTCWAIDHGKDNADDVHVPV 559
>sp|O01835|CPB3_CAEEL Cytoplasmic polyadenylation element binding protein 3
Length = 751
Score = 207 bits (526), Expect = 4e-53
Identities = 109/273 (39%), Positives = 159/273 (58%), Gaps = 27/273 (9%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQKDL------------NSPIRHNS-- 157
+SRK+F+GGVPWD TE+ L +F +FG +V +P ++ N +R +
Sbjct: 293 FSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGQEARYRSGQSNLAPSNGSLRAQTKY 352
Query: 158 SSNSLKGYCYIIFESEDSVSRLLNQCNKNESNGGE-FFKISSPKFRSKD---------VQ 307
+ + GY Y+IFE E +V+ LL++C++ GE +FKI + + +S + VQ
Sbjct: 353 TGQAATGYVYMIFEDERAVASLLHECSQEIGGAGEWYFKIRAQRSKSTEIRQVGQPQYVQ 412
Query: 308 VIPWITQDSQYCR---LGSQKPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDT 478
+IPW+T DS +C L + K+TVFVGALHGMMTA L ++M + F V LDT
Sbjct: 413 IIPWVTSDSMFCEDDTLLETGIEPKRTVFVGALHGMMTAQVLHSIMEDCFGAVECVQLDT 472
Query: 479 DKYKYPIGSGRVTFSSQKSYMRAVTANFIHVKTGKFSKTIQIDPYLEDSMCNNCFQSPGI 658
DK+KYPIGSGRVTF +Y +A+ ++HV T KF K +QIDP+LE + C C
Sbjct: 473 DKFKYPIGSGRVTFREHGAYFKAIEMGYLHVYTSKFRKRVQIDPFLESTCCMVCNSQSAH 532
Query: 659 YFCRSFECFRYFCSGCWQVWHNRCETLFNHKPL 757
FCR+ CF+Y+C CW + H + + H P+
Sbjct: 533 CFCRNKNCFKYYCHNCWALDHGKDDDQEVHIPV 565
>sp|Q6E3C9|CPB1_CAERE Cytoplasmic polyadenylation element binding protein 1
Length = 594
Score = 150 bits (379), Expect = 4e-36
Identities = 86/267 (32%), Positives = 142/267 (53%), Gaps = 18/267 (6%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQKDLNSPIRHNSSS----------NS 169
YSRKVF+GG+P D E ++ + F FG + V +P++ ++ R + S
Sbjct: 255 YSRKVFIGGLPIDVAEEEVWATFGAFGKVLVDWPRRPEHNNGRGGDNMYEVEMGRRNLRS 314
Query: 170 LKGYCYIIFESEDSVSRLLNQCNKNESNGGEFFKISSPKFRSKDVQVIPWITQDSQYCRL 349
+ GY +++F +E SV L+N C E+ + ++SSP K VQV PW D Y
Sbjct: 315 VSGYVFLVFTNERSVQELVNACEFYENK--YYLQLSSPTMSDKAVQVRPWRLSDIDYFCD 372
Query: 350 GSQKPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTD-KYKYPIGSGRVTFSS 526
S D ++TVF+G + A LA+ + + + V + +D D + KYP G+ RVTF++
Sbjct: 373 DSCSVDHRRTVFIGGVPRPTRASDLASSLQDYYGKVSYVGIDIDPELKYPKGAARVTFAN 432
Query: 527 QKSYMRAVTANFIHVKTGKFSKTIQIDPY-LEDSMCNN-----CFQSPGIYFCRSFECFR 688
+S++RA++ F+ V + +K ++I PY +ED C+ C + YFC C +
Sbjct: 433 SQSFVRAISGRFVQVTHAETNKRVEIKPYVMEDQHCDECQGVLCKHNYAPYFCGDSSCLQ 492
Query: 689 YFCSGCWQVWHN-RCETLFNHKPLRRT 766
Y+C CW H C++ +H+P+ RT
Sbjct: 493 YYCEACWDRMHYIVCDSRADHRPMVRT 519
>sp|Q6E3D0|CBP1_CAEBR Cytoplasmic polyadenylation element binding protein 1
Length = 585
Score = 149 bits (377), Expect = 7e-36
Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQK--------DLNSPIRHNSSSNSLK 175
YSRKVF+GG+P D + ++ F FG + + +P++ D+ + S+
Sbjct: 249 YSRKVFIGGLPIDVPDEEVYVTFGSFGKVLIDWPRRPEHNGRASDMYESEMGRRNLRSVS 308
Query: 176 GYCYIIFESEDSVSRLLNQCNKNESNGGEFFKISSPKFRSKDVQVIPWITQDSQYCRLGS 355
GY +++F EDSV L+N C + G + ++SSP + K VQV PW D Y
Sbjct: 309 GYVFLVFTHEDSVQDLVNACEFYD--GKYYLQLSSPTMQDKAVQVRPWRLSDIDYFSEEK 366
Query: 356 QKPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTD-KYKYPIGSGRVTFSSQK 532
D ++TVF+G + A LA + + + V + +D D + KYP G+ RVTF++ +
Sbjct: 367 VTVDPRRTVFIGGVPRPTRACDLARSLQDYYGKVSYVGIDIDPELKYPKGAARVTFATAQ 426
Query: 533 SYMRAVTANFIHVKTGKFSKTIQIDPY-LEDSMCNN-----CFQSPGIYFCRSFECFRYF 694
S++RA++ F+ V + +K ++I PY +ED C+ C + Y+C C +Y+
Sbjct: 427 SFVRAISGRFVQVTHAETNKRVEIKPYVMEDQYCDECEGDLCKHNYAPYYCGDSSCLQYY 486
Query: 695 CSGCWQVWHNRC-ETLFNHKPLRRT 766
C GCW H ++ +H+P+ RT
Sbjct: 487 CEGCWDRMHYEMGQSRADHRPMVRT 511
>sp|Q6E3C7|CPB1_CAEJA Cytoplasmic polyadenylation element binding protein 1
Length = 617
Score = 149 bits (375), Expect = 1e-35
Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 15/264 (5%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQK-------DLNSPIRHNSSSNSLKG 178
YSRKVF+GG+P D TE ++ + F FG + V +P++ D +S S+ G
Sbjct: 271 YSRKVFIGGLPIDVTEEEVWATFGWFGKVLVDWPRRPEHGGRGDFYEMDMGRRNSRSVSG 330
Query: 179 YCYIIFESEDSVSRLLNQCNKNESNGGEFFKISSPKFRSKDVQVIPWITQDSQYCRLGSQ 358
Y +++F+ E +V L+N C E+ + ++SSP K VQV W D Y +
Sbjct: 331 YVFLVFQDEKAVQELVNACELYENK--YYLQLSSPTMADKAVQVRAWRLSDIDYFCDENA 388
Query: 359 KPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTD-KYKYPIGSGRVTFSSQKS 535
D ++TVF+G + A LA + + + V + +D D + KYP G+ RVTF++ +S
Sbjct: 389 SVDHRRTVFIGGVPRPTRASDLAYCLQQHYGKVSYVGIDIDPELKYPKGAARVTFATAQS 448
Query: 536 YMRAVTANFIHVKTGKFSKTIQIDPY-LEDSMCNN-----CFQSPGIYFCRSFECFRYFC 697
++RA++ F+ V +K ++I PY +ED C+ C + YFC C +Y+C
Sbjct: 449 FVRAISGRFVQVTHADTNKRVEIKPYVMEDQHCDECQGKLCKHNYAPYFCGDSSCLQYYC 508
Query: 698 SGCWQVWH-NRCETLFNHKPLRRT 766
CW H C+ +H+P+ RT
Sbjct: 509 EACWDRMHYAMCDNRADHRPMVRT 532
>sp|Q03571|CPB1_CAEEL Cytoplasmic polyadenylation element binding protein 1
Length = 372
Score = 147 bits (370), Expect = 5e-35
Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 19/268 (7%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQKDLNSP------IRHNSSSNSLKGY 181
YSRKVF+GG+P D +E + + F FG + + +P++ ++ ++ S S ++ GY
Sbjct: 56 YSRKVFIGGLPIDVSEEQVWATFGAFGKVLIDWPRRPEHNAERAEQELKKGSGSRAVTGY 115
Query: 182 CYIIFESEDSVSRLLNQCNKNESNGGEFFKISSPKFRSKDVQVIPWITQDSQYCRLGSQK 361
+++F E SV L+N C E + ++SSP K VQV PW D Y +
Sbjct: 116 VFLVFTHERSVQELVNACEFYEDK--YYLQLSSPTMTDKAVQVRPWRLSDIDYFCNDNSS 173
Query: 362 PDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTD-KYKYPIGSGRVTFSSQKSY 538
D ++TVF+G + A LA + + V + +D D + KYP G+ RVTFS+ +++
Sbjct: 174 VDHRRTVFIGGVPRPTRAQDLARCLEGHYGKVSYVGIDIDPELKYPKGAARVTFSTSQAF 233
Query: 539 MRAVTANFIHVKTGKFSKTIQIDPY-LEDSMCNN-----CFQSPGIYFCRSFECFRYFCS 700
+RA++ F+ V + +K ++I PY +E+ C+ C + YFC C +Y+C
Sbjct: 234 VRAISGRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCKHNYAPYFCGHASCLQYYCE 293
Query: 701 GCWQVWH------NRCETLFNHKPLRRT 766
GCW H N+ E H P+ RT
Sbjct: 294 GCWDRMHIGKNEDNKLED--QHYPMVRT 319
>sp|Q6E3F3|CPB2_CAEBR Cytoplasmic polyadenylation element binding protein 2
Length = 566
Score = 115 bits (288), Expect = 2e-25
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 6/200 (3%)
Frame = +2
Query: 176 GYCYIIFESEDSVSRLLNQCNKNESNGGEFFKISSPKFRSKDVQVIPWITQDSQYCRLGS 355
GY +++FE E SV L+ +C + E F I VQ+ PW+ D+++ +
Sbjct: 367 GYVFLLFEKERSVRDLVTECFEEEEG---LFIILESAIEPIRVQIRPWLLADAEFLMDFN 423
Query: 356 QKPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTD-KYKYPIGSGRVTFSSQK 532
++K F+G + + A LA+ + + NV+ +D D K+KYP GSGRV FS+
Sbjct: 424 VPINTKMVAFIGGVPRPLKAVELAHFFEQTYGNVVCVGIDIDNKFKYPRGSGRVAFSNYH 483
Query: 533 SYMRAVTANFIHVKTGKFSKTIQIDPY-LEDSMCNNC----FQSPGIYFCRSFECFRYFC 697
+Y++A+T +I + K ++I PY + C C + +FC S ECF+Y+C
Sbjct: 484 AYVQAITDRYIVLDHEDIHKRVEIKPYFFHNQSCEECSSRYHRQYAPFFCPSLECFQYYC 543
Query: 698 SGCWQVWHNRCETLFNHKPL 757
CW H R + F+H P+
Sbjct: 544 EPCWHKMHAR-PSRFHHMPV 562
Score = 37.4 bits (85), Expect = 0.054
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQK 127
YSRKVF+GG+P E D++ F ++G L V +P K
Sbjct: 236 YSRKVFVGGLPACVKEMDILHFFSRYGRLQVDWPSK 271
>sp|Q6E3F2|CPB2_CAERE Cytoplasmic polyadenylation element binding protein 2
Length = 571
Score = 114 bits (285), Expect = 3e-25
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 6/200 (3%)
Frame = +2
Query: 176 GYCYIIFESEDSVSRLLNQCNKNESNGGEFFKISSPKFRSKDVQVIPWITQDSQYCRLGS 355
GY +++FE E SV L++ C + E G F + S VQ+ PW+ D+++ +
Sbjct: 372 GYVFLLFEKERSVRELVSDCFEEEE--GLFITLES-SIEPIRVQIRPWLLADAEFLMDFN 428
Query: 356 QKPDSKKTVFVGALHGMMTAYALANVMNELFDNVIFTALDTD-KYKYPIGSGRVTFSSQK 532
++K F+G + + A LA+ + + NV+ +D D K+KYP GSGRV FS+
Sbjct: 429 VPINTKLVAFIGGVPRPLKAVELAHFFEQTYGNVVCVGIDIDNKFKYPRGSGRVAFSNYD 488
Query: 533 SYMRAVTANFIHVKTGKFSKTIQIDPY-LEDSMCNNCF----QSPGIYFCRSFECFRYFC 697
+Y++A+T +I + K ++I PY + C C + +FC S ECF+Y+C
Sbjct: 489 AYVQAITDRYIVLDHEDIHKRVEIKPYFFHNQSCEECSSRYNRQYAPFFCPSLECFQYYC 548
Query: 698 SGCWQVWHNRCETLFNHKPL 757
CW H+ + F+H P+
Sbjct: 549 EPCWHKMHSH-PSRFHHMPV 567
Score = 40.4 bits (93), Expect = 0.006
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 20 YSRKVFLGGVPWDSTESDLISAFIKFGYLSVMFPQK 127
YSRKVF+GG+P ESD+++ F ++G L V +P K
Sbjct: 234 YSRKVFVGGLPGCVKESDILNFFSRYGRLQVDWPSK 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,760,911
Number of Sequences: 369166
Number of extensions: 1819710
Number of successful extensions: 5185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5127
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)