Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L05
(582 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 171 1e-42
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 168 8e-42
sp|O65353|RL5_HELAN 60S ribosomal protein L5 152 8e-37
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 151 1e-36
sp|P49227|RL5_ARATH 60S ribosomal protein L5 151 1e-36
sp|O44248|RL5_ANOGA 60S ribosomal protein L5 147 2e-35
sp|P09895|RL5_RAT 60S ribosomal protein L5 146 3e-35
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 146 3e-35
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 146 4e-35
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 145 5e-35
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 171 bits (433), Expect = 1e-42
Identities = 93/185 (50%), Positives = 122/185 (65%), Gaps = 3/185 (1%)
Frame = +1
Query: 7 MDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIP 183
+DE Y G T++DG +E +D + F A LD GL RT+TGA VFGAMKGA DGGL+IP
Sbjct: 115 LDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIP 174
Query: 184 HSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGE 360
HS KRFPGY E ++A++H+ IFG HV +M L EE+E F RQFS+YI+ G++ +
Sbjct: 175 HSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEEDEEAFKRQFSQYIKHGVTAD 234
Query: 361 NIEETIAAVHEAIREDPSPAKTEKTPYTG-PKITLKKKMNLLQKRDRIKQIKDTYLAKLR 537
+EE H AIREDP+P K KT + G K +KKM Q+RDR+KQ K ++ LR
Sbjct: 235 TVEEMYTKAHAAIREDPTPKK--KTDFAGKTKRWNRKKMTFSQRRDRVKQKKASF---LR 289
Query: 538 AENQE 552
A+ QE
Sbjct: 290 AKQQE 294
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 168 bits (426), Expect = 8e-42
Identities = 90/184 (48%), Positives = 119/184 (64%), Gaps = 3/184 (1%)
Frame = +1
Query: 1 LDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLN 177
L +D Y G TDV G ++E +D F LD GL RT+TG VFGAMKGAVDGGLN
Sbjct: 113 LGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLN 172
Query: 178 IPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVLE-ENEAMFNRQFSKYIEAGIS 354
+PHS KRFPGY E K+NA++H+ IFG HV E+M LE ++E F RQFSKYI+ G++
Sbjct: 173 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 232
Query: 355 GENIEETIAAVHEAIREDPSPAKTE-KTPYTGPKITLKKKMNLLQKRDRIKQIKDTYLAK 531
+ IE HEAIR DPS K E K K K+K+ L ++++RIKQ K +++ +
Sbjct: 233 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 292
Query: 532 LRAE 543
L+A+
Sbjct: 293 LQAQ 296
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 152 bits (383), Expect = 8e-37
Identities = 79/186 (42%), Positives = 120/186 (64%), Gaps = 2/186 (1%)
Frame = +1
Query: 1 LDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLN 177
L +D+ Y+G+T+V G+ +++ +++ F LD GL+RT+TGA VFGAMKGAVDGGLN
Sbjct: 113 LGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLN 172
Query: 178 IPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGIS 354
I HS KRFPG+ E ++NAD+H+ IFG+HV E+M L EE++ + RQFS+YI+ G++
Sbjct: 173 ILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLN 232
Query: 355 GENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKDTYLAKL 534
+ IE HEAIR +P+ K + + T +KK+ Q++ ++ K +L K+
Sbjct: 233 ADAIEGLYKKAHEAIRANPARKTVAKKAHPKKRWT-EKKLTREQRQGKVAAAKAEWLKKI 291
Query: 535 RAENQE 552
A E
Sbjct: 292 EAGEVE 297
>sp|P49405|RL5_CAEEL 60S ribosomal protein L5
Length = 293
Score = 151 bits (382), Expect = 1e-36
Identities = 74/178 (41%), Positives = 115/178 (64%), Gaps = 6/178 (3%)
Frame = +1
Query: 1 LDMDEKYLGATDVDGKAVDLEIDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNI 180
+ +D Y G ++ G+ ++E + +R PF AVLD GL RT+TG+ +F MKG DGG+N+
Sbjct: 113 IGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINV 172
Query: 181 PHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISG 357
PHSE RF G+ +E +YNA+ H+DRI GKHV ++M+ L EE+E + RQFSK++ AG++
Sbjct: 173 PHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNA 232
Query: 358 ENIEETIAAVHEAIREDPSPAKTEKTP----YTGPKITL-KKKMNLLQKRDRIKQIKD 516
+N+ T VH AIR D SPA + +T ++T ++K + K+ + Q+K+
Sbjct: 233 DNLVATYQKVHSAIRADASPAAKKAAKPSKRHTAKRLTYDERKQRVADKKALLLQLKE 290
>sp|P49227|RL5_ARATH 60S ribosomal protein L5
Length = 301
Score = 151 bits (381), Expect = 1e-36
Identities = 78/173 (45%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LDMDEKYLGATDVDGKAVDLEIDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNI 180
L+MD++Y G + G+ +E + RRPF A+LD GL+RT+TG VFGA+KGA+DGGL+I
Sbjct: 113 LEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 172
Query: 181 PHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVLEENE-AMFNRQFSKYIEAGISG 357
PHS+KRF G+ KE + +A+IH++ I+G HV +M +L E+E FS YI+ G+
Sbjct: 173 PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEA 232
Query: 358 ENIEETIAAVHEAIREDPSPAKTEKT-PYTGPKITLKKKMNLLQKRDRIKQIK 513
E+IEE VH AIR +P+ KTEK+ P + LKK +K I+++K
Sbjct: 233 ESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVK 285
>sp|O44248|RL5_ANOGA 60S ribosomal protein L5
Length = 327
Score = 147 bits (371), Expect = 2e-35
Identities = 78/153 (50%), Positives = 98/153 (64%), Gaps = 4/153 (2%)
Frame = +1
Query: 1 LDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLN 177
L +D Y G TDV G+ +E +DE F LD GL RT+TG+ VFGAMKGAVDGGLN
Sbjct: 113 LRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGSRVFGAMKGAVDGGLN 172
Query: 178 IPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGIS 354
IPHS KRFPGYS E +NA++H+D IFG HV +M L EE+E F RQFSKYI GI
Sbjct: 173 IPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIK 232
Query: 355 GENIEETIAAVHEAIREDPSPAKT--EKTPYTG 447
++IE H +IR+ P + ++P +G
Sbjct: 233 ADDIENIYKNAHASIRKIPPSRRNPRRRSPRSG 265
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 146 bits (369), Expect = 3e-35
Identities = 78/175 (44%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Frame = +1
Query: 7 MDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIP 183
MD+ Y G +V+G ++E ID + FT LD GL RT+TG VFGA+KGAVDGGL+IP
Sbjct: 115 MDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 174
Query: 184 HSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGE 360
HS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+YI+ ++ +
Sbjct: 175 HSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPD 234
Query: 361 NIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKDTYL 525
+EE H AIRE+P K K K + KM+L QK+DR+ Q K ++L
Sbjct: 235 MMEEMYKKAHAAIRENPVYEKKPKRE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 146 bits (369), Expect = 3e-35
Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Frame = +1
Query: 7 MDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIP 183
+D+ Y G +V G ++E ID E FT LD GL RT+TG VFGA+KGAVDGGL+IP
Sbjct: 115 LDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIP 174
Query: 184 HSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGE 360
HS KRFPGY E ++N ++H+ IF ++V E+M +L EE+E + +QFS+YI+ G++ +
Sbjct: 175 HSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTAD 234
Query: 361 NIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKDTYL 525
+E+ H IRE+P K K K + K++L QK+DR+ Q K ++L
Sbjct: 235 QVEDLYKKAHAGIRENPVHEKKPKKE-VKKKRWNRAKLSLEQKKDRVAQKKASFL 288
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 146 bits (368), Expect = 4e-35
Identities = 78/175 (44%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Frame = +1
Query: 7 MDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIP 183
MD+ Y G +V+G ++E ID + FT LD GL RT+TG VFGA+KGAVDGGL+IP
Sbjct: 115 MDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 174
Query: 184 HSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGE 360
HS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+YI+ ++ +
Sbjct: 175 HSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPD 234
Query: 361 NIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKDTYL 525
+EE H AIRE+P K K K + KM+L QK+DR+ Q K ++L
Sbjct: 235 MMEEMYKKAHAAIRENPVYEKKPKRE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 145 bits (367), Expect = 5e-35
Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Frame = +1
Query: 7 MDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIP 183
MD+ Y G +V G ++E ID + FT LD GL RT+TG VFGA+KGAVDGGL+IP
Sbjct: 115 MDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 174
Query: 184 HSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGE 360
HS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+YI+ ++ +
Sbjct: 175 HSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPD 234
Query: 361 NIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKDTYL 525
+EE H AIRE+P K K K + KM+L QK+DR+ Q K ++L
Sbjct: 235 MMEEMYKKAHAAIRENPVYEKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,841,297
Number of Sequences: 369166
Number of extensions: 1271765
Number of successful extensions: 4917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4861
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)