Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L01
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 302 8e-82
sp|Q26519|TPM_SCHJA Tropomyosin 300 3e-81
sp|Q95PU1|TPM_ECHMU Tropomyosin 299 7e-81
sp|Q26503|TPM_SCHHA Tropomyosin 298 1e-80
sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) 290 3e-78
sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 286 5e-77
sp|Q23758|TPM_CLOSI Tropomyosin 282 7e-76
sp|Q9GZ71|TPM_HALDV Tropomyosin 281 2e-75
sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) 276 4e-74
sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39) 273 3e-73
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49)
Length = 284
Score = 302 bits (773), Expect = 8e-82
Identities = 165/239 (69%), Positives = 184/239 (76%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
L ++ AQ +CDEAQE L E KLE T+KRAT+AEAEVAA+TRRI+L+E DLE + SR
Sbjct: 46 LNNKMKQAQIDCDEAQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSR 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 106 LTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAIAEVD ER EARLE ESK +VVGNNMK+LEISEQE+AQREESYE+TI
Sbjct: 166 ARKLAIAEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD FAELTGY
Sbjct: 226 RDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|Q26519|TPM_SCHJA Tropomyosin
Length = 284
Score = 300 bits (768), Expect = 3e-81
Identities = 164/239 (68%), Positives = 183/239 (76%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
L ++ AQ +CDE QE L E KLE TEKRAT+AEA+VAA+TRRI+L+E DLE + SR
Sbjct: 46 LNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVSSSR 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 106 LTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAIAEVD ER EARLE ESK +VVGNNMK+LEISEQE+AQREESYE+TI
Sbjct: 166 ARKLAIAEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD FAELTGY
Sbjct: 226 RDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|Q95PU1|TPM_ECHMU Tropomyosin
Length = 284
Score = 299 bits (765), Expect = 7e-81
Identities = 157/235 (66%), Positives = 186/235 (79%)
Frame = +1
Query: 13 LQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESRFQEA 192
++ Q E D QE+L EA +KLE TEKRAT+AEAEVAA+TRRI+L+E D EQ+ R E
Sbjct: 50 VKNIQTEVDTVQESLQEAISKLEETEKRATNAEAEVAAMTRRIRLLEEDFEQSSGRLTET 109
Query: 193 SGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEVARKL 372
S KL+ ASK AEESE+NRK LETRSI+DDE++AQLEEQVKEAKYIAEDA+RKYDE AR+L
Sbjct: 110 STKLDDASKAAEESERNRKTLETRSISDDERMAQLEEQVKEAKYIAEDAERKYDEAARRL 169
Query: 373 AIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTIRDLT 552
A+ EVDLER E+RLE ESK ++VGNNMKSLE+SEQE+ QREESYE+TIRDLT
Sbjct: 170 AVTEVDLERAESRLETSESKIVELEEELRIVGNNMKSLEVSEQESLQREESYEETIRDLT 229
Query: 553 ERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
ERLK VSKLQ+EVDRLED+LLSEKE+Y+A+S ELDT FAELT +
Sbjct: 230 ERLKTAEQRAAEAERQVSKLQNEVDRLEDELLSEKERYRAISGELDTTFAELTSF 284
Score = 47.8 bits (112), Expect = 4e-05
Identities = 33/137 (24%), Positives = 65/137 (47%)
Frame = +1
Query: 4 QKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESRF 183
+K+L+T DE L E +++ + A DAE + RR+ + E DLE+ ESR
Sbjct: 127 RKTLETRSISDDERMAQLEE---QVKEAKYIAEDAERKYDEAARRLAVTEVDLERAESRL 183
Query: 184 QEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEVA 363
+ + K+ ++ N K LE ++ EE +++ + A+++ E
Sbjct: 184 ETSESKIVELEEELRIVGNNMKSLEVSEQESLQREESYEETIRDLTERLKTAEQRAAEAE 243
Query: 364 RKLAIAEVDLERTEARL 414
R+++ + +++R E L
Sbjct: 244 RQVSKLQNEVDRLEDEL 260
>sp|Q26503|TPM_SCHHA Tropomyosin
Length = 284
Score = 298 bits (763), Expect = 1e-80
Identities = 162/239 (67%), Positives = 183/239 (76%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
L ++ AQ +CDE QE L E KLE T+KRAT+AEAEVAA+TRRI+L+E DLE + SR
Sbjct: 46 LNTKMKQAQIDCDEVQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSR 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 106 LTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAIAEVD +R EARLE ESK +V+GNNMK+LEISEQE+AQREESYE+TI
Sbjct: 166 ARKLAIAEVDFKRAEARLEAAESKIVELEEELRVIGNNMKALEISEQESAQREESYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD FAELTGY
Sbjct: 226 RDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII)
Length = 284
Score = 290 bits (742), Expect = 3e-78
Identities = 153/239 (64%), Positives = 181/239 (75%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
LQK Q + D A E L EA TKLEA+EK + E++ A L RRIQL+E DLE++E R
Sbjct: 46 LQKKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLERSEER 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+RKYDE
Sbjct: 106 LQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE+TI
Sbjct: 166 ARKLAITEVDLERAEARLEAAEAKIIELEEELKVVGNNMKSLEISEQEASQREDSYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLT+RLK VSKLQ EVDRLED+LL+EKE+YK++SDELD+ FAEL GY
Sbjct: 226 RDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELDSTFAELAGY 284
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1)
Length = 284
Score = 286 bits (732), Expect = 5e-77
Identities = 152/239 (63%), Positives = 181/239 (75%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
LQK + + D E L +ANTKLEA+EK+ + E+E A L RRIQL+E DLE++E R
Sbjct: 46 LQKKFAILENDFDSINEQLLDANTKLEASEKKNAEIESETAGLQRRIQLLEEDLERSEER 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+RK+DE
Sbjct: 106 LQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKFDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE+TI
Sbjct: 166 ARKLAITEVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLT+RLK VSKLQ EVDRLED+LL+EKE+YKA SDELD+ FAEL GY
Sbjct: 226 RDLTQRLKDAENRASEAERTVSKLQKEVDRLEDELLAEKERYKATSDELDSTFAELAGY 284
>sp|Q23758|TPM_CLOSI Tropomyosin
Length = 284
Score = 282 bits (722), Expect = 7e-76
Identities = 155/239 (64%), Positives = 177/239 (74%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
L ++ AQ E DE QEAL ++ K+E T+KRAT+AEAEVA +TRRI+L+E DLE + SR
Sbjct: 46 LNNRMKQAQTELDEIQEALQDSLNKMEETDKRATNAEAEVARMTRRIRLLEEDLEVSSSR 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
E K + ASK AEESE+ RK LE RSIADDE L+QLE+Q KE KYIAEDADRKYDE
Sbjct: 106 LTETLAKFDEASKTAEESERGRKELEIRSIADDEGLSQLEDQQKEGKYIAEDADRKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAI EVD ER E+RLE ESK +VVGNNMK+LEISEQE+AQREESYE+TI
Sbjct: 166 ARKLAIVEVDFERAESRLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLTERLK VSKLQ+EVD LEDDLLSEK +YK LS LD FAELTGY
Sbjct: 226 RDLTERLKAAEQRAAEAERQVSKLQNEVDHLEDDLLSEKIRYKDLSGGLDQTFAELTGY 284
Score = 39.3 bits (90), Expect = 0.013
Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 14/239 (5%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
++K + + E + A E + +L+ E+ E E+ L R++ + +L++ +
Sbjct: 4 IKKKMIAMKLEKENAMERAVQYEAQLKQKEEEQEKKETEIGELNNRMKQAQTELDEIQEA 63
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
Q++ K+E K A +E AE A +
Sbjct: 64 LQDSLNKMEETDKRATNAE------------------------------AEVA-----RM 88
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEI---------SEQEAAQ 513
R++ + E DLE + +RL +K + K LEI S+ E Q
Sbjct: 89 TRRIRLLEEDLEVSSSRLTETLAKFDEASKTAEESERGRKELEIRSIADDEGLSQLEDQQ 148
Query: 514 REESY--EDTIRDLTERLKXXXXXXXXXXXXVSKL---QSEVDRLEDDLLSEKEKYKAL 675
+E Y ED R E + S+L +S++ LE++L KAL
Sbjct: 149 KEGKYIAEDADRKYDEAARKLAIVEVDFERAESRLEAAESKIVELEEELRVVGNNMKAL 207
>sp|Q9GZ71|TPM_HALDV Tropomyosin
Length = 284
Score = 281 bits (719), Expect = 2e-75
Identities = 149/239 (62%), Positives = 177/239 (74%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
LQK + + D E L EA KLE +EKR T+ E EV+ TR+I L+E DLE+ E R
Sbjct: 46 LQKKCANLENDFDNVNEQLQEAMAKLETSEKRVTEMEQEVSGTTRKITLLEEDLERNEER 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
Q A+ +LE ASK A+ESE+ ++LE+RS+ADDE++ QLE Q+KEAKYIAEDA+RKYDE
Sbjct: 106 LQTATERLEEASKAADESERGARVLESRSLADDERIDQLEAQLKEAKYIAEDAERKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE+TI
Sbjct: 166 ARKLAITEVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYEETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLT+RLK VSKLQ EVDRLED+LL+EKEKYKA+SDELD FAEL GY
Sbjct: 226 RDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKEKYKAISDELDQTFAELAGY 284
>sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII)
Length = 284
Score = 276 bits (707), Expect = 4e-74
Identities = 144/236 (61%), Positives = 183/236 (77%)
Frame = +1
Query: 7 KSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESRFQ 186
K +Q + + AQ LAE NTKLE T+KRAT+AEAEVA+L +RI+ +E +LE TE+R Q
Sbjct: 48 KKIQQVDTDKETAQTQLAETNTKLEETDKRATEAEAEVASLQKRIRQLEDELESTETRLQ 107
Query: 187 EASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEVAR 366
EA+ KLE ASK A+ES++ RK+LE R+ AD+E++ QLEEQ+KE+ ++AEDADRKYDE AR
Sbjct: 108 EATVKLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADRKYDEAAR 167
Query: 367 KLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTIRD 546
KLAI EV+LER E+RLE ESK ++VGNN+KSLEISEQEAAQREE+YE+ IRD
Sbjct: 168 KLAITEVELERAESRLEAAESKITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRD 227
Query: 547 LTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTG 714
LTERLK V+ LQ++ DRLED+L++EKEKYKALS+ELD+ FAELTG
Sbjct: 228 LTERLKAAEDRAQESERLVNTLQADADRLEDELVTEKEKYKALSEELDSTFAELTG 283
>sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39)
Length = 284
Score = 273 bits (699), Expect = 3e-73
Identities = 142/239 (59%), Positives = 175/239 (73%)
Frame = +1
Query: 1 LQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESR 180
LQ Q + D A E L EA TKLEA+EK + E++ A L RRIQL+E DLE++E R
Sbjct: 46 LQNKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLERSEER 105
Query: 181 FQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEV 360
Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+RKYDE
Sbjct: 106 LQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEA 165
Query: 361 ARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDTI 540
ARKLAI EVDLER EARLE E+K +VGNN+K+L I +A+QRE+SY++TI
Sbjct: 166 ARKLAITEVDLERAEARLEAAEAKVWELDEELHIVGNNIKTLSIQNDQASQREDSYQETI 225
Query: 541 RDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 717
RDLT+RLK VSKLQ EVDRLED+LL+EKE+YK++SDELD+ FAEL GY
Sbjct: 226 RDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELDSTFAELAGY 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.129 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,523,039
Number of Sequences: 369166
Number of extensions: 835211
Number of successful extensions: 5228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4822
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)