Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K19
(662 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20488|SYPH_BOVIN Synaptophysin (Major synaptic vesicle ... 97 4e-20
sp|P08247|SYPH_HUMAN Synaptophysin (Major synaptic vesicle ... 96 6e-20
sp|P07825|SYPH_RAT Synaptophysin (Major synaptic vesicle pr... 96 8e-20
sp|Q62277|SYPH_MOUSE Synaptophysin (Major synaptic vesicle ... 96 8e-20
sp|Q8TBG9|SYNPR_HUMAN Synaptoporin 93 7e-19
sp|Q8BGN8|SYNPR_MOUSE Synaptoporin 93 7e-19
sp|P22831|SYNPR_RAT Synaptoporin 93 7e-19
sp|Q5VXT5|SYPL2_HUMAN Synaptophysin-like protein 2 80 5e-15
sp|O89104|SYPL2_MOUSE Synaptophysin-like protein 2 (Mitsugu... 79 1e-14
sp|O62646|SYPL2_RABIT Synaptophysin-like protein 2 (Mitsugu... 79 1e-14
>sp|P20488|SYPH_BOVIN Synaptophysin (Major synaptic vesicle protein p38)
Length = 313
Score = 97.1 bits (240), Expect = 4e-20
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTSTGK-CKAS 196
+N++ P +DF+ TAV A +W + S AWA G+S +KM TDP II G+ C G CK
Sbjct: 134 ENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKGMHVCHQPGNTCKEL 193
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLW 301
GLN S++ GF N+ LW NLWF+FKET W
Sbjct: 194 RDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGW 228
>sp|P08247|SYPH_HUMAN Synaptophysin (Major synaptic vesicle protein p38)
Length = 313
Score = 96.3 bits (238), Expect = 6e-20
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTSTGK-CKAS 196
+N++ P +DF+ TAV A +W + S AWA G+S +KM TDP II + C TG CK
Sbjct: 134 ENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQTGNTCKEL 193
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLW 301
GLN S++ GF N+ LW NLWF+FKET W
Sbjct: 194 RDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGW 228
>sp|P07825|SYPH_RAT Synaptophysin (Major synaptic vesicle protein p38)
Length = 307
Score = 95.9 bits (237), Expect = 8e-20
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTSTGK-CKAS 196
+N++ P +DF+ TAV A +W + S AWA G+S +KM TDP II + C TG CK
Sbjct: 129 ENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPMCRQTGNTCKEL 188
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLW 301
GLN S++ GF N+ LW NLWF+FKET W
Sbjct: 189 RDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGW 223
>sp|Q62277|SYPH_MOUSE Synaptophysin (Major synaptic vesicle protein p38) (BM89 antigen)
Length = 314
Score = 95.9 bits (237), Expect = 8e-20
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTSTGK-CKAS 196
+N++ P +DF+ TAV A +W + S AWA G+S +KM TDP II + C TG CK
Sbjct: 135 ENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPMCRQTGNTCKEL 194
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLW 301
GLN S++ GF N+ LW NLWF+FKET W
Sbjct: 195 RDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGW 229
>sp|Q8TBG9|SYNPR_HUMAN Synaptoporin
Length = 265
Score = 92.8 bits (229), Expect = 7e-19
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTS-TGKCKAS 196
+N+R P IDFI+T V + LW + S AWA G+S +K+ TDP +++L + C + KC A
Sbjct: 109 ENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAI 168
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLWY 304
LN S++ GF N LWA N+WF+FKET W+
Sbjct: 169 HSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWH 204
>sp|Q8BGN8|SYNPR_MOUSE Synaptoporin
Length = 265
Score = 92.8 bits (229), Expect = 7e-19
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTS-TGKCKAS 196
+N+R P IDFI+T V + LW + S AWA G+S +K+ TDP +++L + C + KC A
Sbjct: 109 ENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAV 168
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLWY 304
LN S++ GF N LWA N+WF+FKET W+
Sbjct: 169 HSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWH 204
>sp|P22831|SYNPR_RAT Synaptoporin
Length = 265
Score = 92.8 bits (229), Expect = 7e-19
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +2
Query: 20 QNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTS-TGKCKAS 196
+N+R P IDFI+T V + LW + S AWA G+S +K+ TDP +++L + C + KC A
Sbjct: 109 ENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAV 168
Query: 197 LYGSYGGLNASLIAGFANIALWAANLWFLFKETLWY 304
LN S++ GF N LWA N+WF+FKET W+
Sbjct: 169 HSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWH 204
>sp|Q5VXT5|SYPL2_HUMAN Synaptophysin-like protein 2
Length = 272
Score = 80.1 bits (196), Expect = 5e-15
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +2
Query: 2 FSEMSFQNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTST- 178
F + +N R P +DF +T W + + AW G++ +K T P+ + + C
Sbjct: 139 FHNLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEE 198
Query: 179 GKCKASLYGSYGGLNASLIAGFANIALWAANLWFLFKETLWYERRNPSDQ 328
C A S G N S++ GF N LWA N WF+FKET W+ + DQ
Sbjct: 199 AVCSAGATPSMGLANISVLFGFINFFLWAGNCWFVFKETPWHGQGQGQDQ 248
>sp|O89104|SYPL2_MOUSE Synaptophysin-like protein 2 (Mitsugumin-29) (Mg29)
Length = 264
Score = 79.0 bits (193), Expect = 1e-14
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 FSEMSFQNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTST- 178
F ++ +N R P +DF +T W + + AW G++ +K T P+ + + C
Sbjct: 139 FHKLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEE 198
Query: 179 GKCKASLYGSYGGLNASLIAGFANIALWAANLWFLFKETLWYERRNPSDQIIGNES 346
C A S G N S++ GF N LWA N WF+FKET W+ + Q ES
Sbjct: 199 AVCSAGATPSMGLANLSVLFGFINFFLWAGNCWFVFKETPWHGQGQDQGQGPSQES 254
>sp|O62646|SYPL2_RABIT Synaptophysin-like protein 2 (Mitsugumin-29)
Length = 264
Score = 79.0 bits (193), Expect = 1e-14
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 FSEMSFQNDRIPKIDFIITAVIAILWFICSVAWADGVSKLKMYTDPAKIILGIEYCTST- 178
F ++ +N R P +DF +T W + + AW G++ +K T P+ + + C
Sbjct: 139 FHKLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEE 198
Query: 179 GKCKASLYGSYGGLNASLIAGFANIALWAANLWFLFKETLWYERRNPSDQIIGNES 346
C A S G N S++ GF N LWA N WF+FKET W+ + Q ES
Sbjct: 199 AVCSAGATPSMGLANISVLFGFINFFLWAGNCWFVFKETPWHGQGQDQGQGPSQES 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,175,428
Number of Sequences: 369166
Number of extensions: 1451284
Number of successful extensions: 3296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3282
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)