Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K18
(763 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P56955|CR5AC_BACTU Pesticidal crystal protein cry5Ac (In... 32 2.4
sp|O00445|SYT5_HUMAN Synaptotagmin-5 (Synaptotagmin V) (SytV) 30 5.4
sp|Q45760|CR5AA_BACUD Pesticidal crystal protein cry5Aa (In... 30 5.4
sp|Q8R143|PTTG_MOUSE Pituitary tumor-transforming gene 1 pr... 30 9.3
sp|Q02100|SKO1_YEAST CRE-binding bZIP protein SKO1 30 9.3
>sp|P56955|CR5AC_BACTU Pesticidal crystal protein cry5Ac (Insecticidal delta-endotoxin
CryVA(c)) (Crystaline entomocidal protoxin) (135 kDa
crystal protein)
Length = 1220
Score = 31.6 bits (70), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 234 TSLIQPVIHSTNNYKERDNITGLTESPPAYDQID 335
TSLIQPVI+ N E +N G S +Y ID
Sbjct: 991 TSLIQPVINRINGLYENENWNGSIRSDISYQNID 1024
>sp|O00445|SYT5_HUMAN Synaptotagmin-5 (Synaptotagmin V) (SytV)
Length = 386
Score = 30.4 bits (67), Expect = 5.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 12 LYFSCCYCSHRQRGRHRSTQKKKPQKSDYL 101
L FSCC+C +R+ R R+ +K + Q +L
Sbjct: 42 LIFSCCFCLYRKSCRRRTGKKSQAQAQVHL 71
>sp|Q45760|CR5AA_BACUD Pesticidal crystal protein cry5Aa (Insecticidal delta-endotoxin
CryVA(a)) (Crystaline entomocidal protoxin) (152 kDa
crystal protein)
Length = 1385
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 234 TSLIQPVIHSTNNYKERDNITGLTESPPAYDQID 335
TSLIQPVI+ N E N G S +Y ID
Sbjct: 1156 TSLIQPVINRINGLYENGNWNGSIRSDISYQNID 1189
>sp|Q8R143|PTTG_MOUSE Pituitary tumor-transforming gene 1 protein-interacting protein
precursor (Pituitary tumor-transforming gene protein
binding factor) (PTTG-binding factor) (PBF)
Length = 174
Score = 29.6 bits (65), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 3 LIGLYFSCCYCSHRQRGRHRSTQKKKPQKSD 95
L+G+ CCYC R++ R KP KSD
Sbjct: 107 LLGITVCCCYCCRRKKSR-------KPDKSD 130
>sp|Q02100|SKO1_YEAST CRE-binding bZIP protein SKO1
Length = 647
Score = 29.6 bits (65), Expect = 9.3
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 99 LPCAGVRESESPVLRATAPP-----LVDASSANESYRLSTTDSQNIGLASTSLIQPVIHS 263
LP GV + PV ++T V+ S +N ++ +T+ + + + + + HS
Sbjct: 291 LPSTGVLAN--PVFKSTPTTNTTDGTVNNSISNSNFSPNTSTKAAVKMDNPAEFNAIEHS 348
Query: 264 TNNYKERDNITGLTESPPAYDQIDR 338
+N+KE +N+T E+ ++ R
Sbjct: 349 AHNHKENENLTTQIENNDQFNNKTR 373
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,102,582
Number of Sequences: 369166
Number of extensions: 1239193
Number of successful extensions: 2832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2832
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)