Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K10
(598 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1) 49 7e-06
sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1) 49 1e-05
sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprote... 47 3e-05
sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprote... 47 3e-05
sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprote... 45 2e-04
sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprote... 45 2e-04
sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprote... 44 3e-04
sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprote... 44 3e-04
sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprote... 44 4e-04
sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-... 37 0.038
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1)
Length = 447
Score = 49.3 bits (116), Expect = 7e-06
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 8 EANTEIRRQMEFNDMHVKRYEKSPPQSRGPRSMDDGMAYQESQRFYTRNPVIINMKGVSI 187
E N +I+ F K P+ P + D G T + ++M+G+
Sbjct: 328 EVNEDIQPMTAFESEKEIELPKEVPEKL-PEAADFGT---------TSSLHFVHMRGLPF 377
Query: 188 STRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRERL 346
D+ FF PL P+ ITM + SG A GE D F ++A AM K+R +
Sbjct: 378 QANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHV 431
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1)
Length = 479
Score = 48.5 bits (114), Expect = 1e-05
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ D+ FF PL P+ ITM + SG A GE D F ++A AM K+R
Sbjct: 402 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 461
Query: 341 RL 346
+
Sbjct: 462 HV 463
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F (hnRNP F) (Nucleolin-like
protein mcs94-1)
Length = 415
Score = 47.4 bits (111), Expect = 3e-05
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D++ FF PL P+ + + G GE D EFA +EA AMSK+R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 341 RL 346
+
Sbjct: 351 NM 352
Score = 36.2 bits (82), Expect = 0.064
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 152 NPVIINMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAYNA 322
N + ++G+ +++ +FF L VP IT+ G GE +FA+++ A A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 323 MSKNRERLGSHSVFLSVIPIREEFGYNKP 409
+ K++ER+G + + E Y+ P
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEEVRSYSDP 197
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
Length = 415
Score = 47.4 bits (111), Expect = 3e-05
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D++ FF PL P+ + + G GE D EFA +EA AMSK+R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 341 RL 346
+
Sbjct: 351 NM 352
Score = 36.2 bits (82), Expect = 0.064
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 152 NPVIINMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAYNA 322
N + ++G+ +++ +FF L VP IT+ G GE +FA+++ A A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 323 MSKNRERLGSHSVFLSVIPIREEFGYNKP 409
+ K++ER+G + + E Y+ P
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEEVRSYSDP 197
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
Length = 449
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D++ FF PL P+ + + G GE D EFA ++A AMSK++
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 341 RL 346
+
Sbjct: 351 NM 352
Score = 38.5 bits (88), Expect = 0.013
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 146 TRNPVIINMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAY 316
T N + ++G+ +++ +FF L VP IT+ G + GE +FA+++ A
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 317 NAMSKNRERLG 349
A+ K++ER+G
Sbjct: 167 KALKKHKERIG 177
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
Length = 449
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D++ FF PL P+ + + G GE D EFA ++A AMSK++
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 341 RL 346
+
Sbjct: 351 NM 352
Score = 38.5 bits (88), Expect = 0.013
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 146 TRNPVIINMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAY 316
T N + ++G+ +++ +FF L VP IT+ G + GE +FA+++ A
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 317 NAMSKNRERLG 349
A+ K++ER+G
Sbjct: 167 KALKKHKERIG 177
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H' (hnRNP H') (FTP-3)
Length = 449
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D++ FF PL P+ + + G GE D EFA ++A AM+K++
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350
Query: 341 RL 346
+
Sbjct: 351 NM 352
Score = 37.4 bits (85), Expect = 0.029
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 146 TRNPVIINMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAY 316
T N + ++G+ +++ +FF L VP +T+ G + GE +FA+++ A
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 317 NAMSKNRERLG 349
A+ K++ER+G
Sbjct: 167 KALKKHKERIG 177
Score = 35.8 bits (81), Expect = 0.084
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 149 RNPVIINMKGVSISTRPDDVFRFFRPLVPLNIT--MRFM---SGAAEGEVDAEFANEDEA 313
R ++ ++G+ S D+V RFF N T +RF+ G GE E +E+E
Sbjct: 8 REGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEV 67
Query: 314 YNAMSKNRERLGSHSV 361
A+ K+RE +G V
Sbjct: 68 KLALKKDRETMGHRYV 83
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')
Length = 449
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D++ FF PL P+ + + G GE D EFA ++A AM+K++
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350
Query: 341 RL 346
+
Sbjct: 351 NM 352
Score = 37.4 bits (85), Expect = 0.029
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 146 TRNPVIINMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAY 316
T N + ++G+ +++ +FF L VP +T+ G + GE +FA+++ A
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 317 NAMSKNRERLG 349
A+ K++ER+G
Sbjct: 167 KALKKHKERIG 177
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9)
Length = 346
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKNRE 340
++M+G+ +D+ FF PL P+ + + G A GE D EF ++A AMSK++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 341 RL 346
+
Sbjct: 257 NM 258
Score = 39.3 bits (90), Expect = 0.008
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPL--VPLNITMRF-MSGAAEGEVDAEFANEDEAYNAMSKN 334
+ ++G+ +++ +FF+ L VP IT+ G + GE +FA+++ A NA+ K+
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 335 RERLG 349
+ER+G
Sbjct: 78 KERIG 82
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-binding motif protein 19)
Length = 960
Score = 37.0 bits (84), Expect = 0.038
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 164 INMKGVSISTRPDDVFRFFRPLVPLNITM-RFMSGAAEGEVDAEFANEDEAYNAMSKNRE 340
+ ++G + +V F PL P+ I + R G G + +F+NE+E A+ NRE
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNRE 355
Query: 341 RLGSHSV 361
+G +
Sbjct: 356 YMGGRYI 362
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,167,567
Number of Sequences: 369166
Number of extensions: 1298503
Number of successful extensions: 3595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3590
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)