Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K04
(629 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 315 5e-86
sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 311 7e-85
sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 311 7e-85
sp|Q06849|ARL2_DROME GTP-binding ADP-ribosylation factor ho... 270 3e-72
sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g1... 259 5e-69
sp|Q19705|ARFM_CAEEL GTP-binding ADP-ribosylation factor ho... 240 2e-63
sp|Q09767|ARL_SCHPO ADP-ribosylation factor-like protein al... 197 2e-50
sp|P36405|ARL3_HUMAN ADP-ribosylation factor-like protein 3 196 5e-50
sp|Q9WUL7|ARL3_MOUSE ADP-ribosylation factor-like protein 3 195 9e-50
sp|P37996|ARL3_RAT ADP-ribosylation factor-like protein 3 (... 194 1e-49
>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2
Length = 184
Score = 315 bits (808), Expect = 5e-86
Identities = 150/183 (81%), Positives = 171/183 (93%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
GLLTILKK+KQKE+E+R+L+LGLDNAGKTTI+KKFNGEDI TISPTLGF+IKTLEHR FK
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
LNIWDVGGQKSLRSYWRNYFE+TDGLIWVVDS+DR RM+DC +EL +LLVEERLAGATLL
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASRIF 540
+FANKQDLPGAL + IR AL LD+IRSHHW I+GCSAVTG+NLL G+DWL+DDI+SRIF
Sbjct: 122 IFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIF 181
Query: 541 SAD 549
+AD
Sbjct: 182 TAD 184
>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2
Length = 184
Score = 311 bits (798), Expect = 7e-85
Identities = 146/183 (79%), Positives = 171/183 (93%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
GLLTILKK+KQKE+E+R+L+LGLDNAGKTTI+KKFNGED+ TISPTLGF+IKTLEHR FK
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFK 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
LNIWDVGGQKSLRSYWRNYFE+TDGLIWVVDS+DR RM+DC +EL +LLVEERLAGATLL
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASRIF 540
+FANKQDLPGAL + I+ AL LD+IRSHHW I+GCSAVTG++LL G+DWL+DDI+SR+F
Sbjct: 122 IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVF 181
Query: 541 SAD 549
+AD
Sbjct: 182 TAD 184
>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2
Length = 184
Score = 311 bits (798), Expect = 7e-85
Identities = 146/183 (79%), Positives = 171/183 (93%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
GLLTILKK+KQKE++VR+L+LGLDNAGKTTI+KKFNGED+ TISPTLGF+IKTLEHR FK
Sbjct: 2 GLLTILKKMKQKERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFK 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
LNIWDVGGQKSLRSYWRNYFE+TDGLIWVVDS+DR RM+DC +EL +LLVEERLAGATLL
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASRIF 540
+FANKQDLPGAL + I+ AL LD+IRSHHW I+GCSAVTG++LL G+DWL+DDI+SR+F
Sbjct: 122 IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVF 181
Query: 541 SAD 549
+AD
Sbjct: 182 TAD 184
>sp|Q06849|ARL2_DROME GTP-binding ADP-ribosylation factor homolog 2 protein
Length = 184
Score = 270 bits (689), Expect = 3e-72
Identities = 128/183 (69%), Positives = 154/183 (84%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
G LT+LKK++QKE+E+RIL+LGLDNAGKTTI+K+FNGE I TISPTLGF+IKTLEH +
Sbjct: 2 GFLTVLKKMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYT 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
LN+WDVGGQKSLRSYWRNYFE+TDGL+WVVDS+DR R++ C +EL LL EERLAGATLL
Sbjct: 62 LNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASRIF 540
V NKQDLPGAL +EI+ L+L+ I +HHW + G SAVTG+ LL +DWLI DIA RIF
Sbjct: 122 VLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKRIF 181
Query: 541 SAD 549
+ D
Sbjct: 182 TLD 184
>sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g18390
Length = 185
Score = 259 bits (661), Expect = 5e-69
Identities = 124/184 (67%), Positives = 153/184 (83%), Gaps = 1/184 (0%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
GLL+I++K+K+KEKE+RIL++GLDN+GKTTIV K NGED S ISPTLGF+IKT+ ++K+
Sbjct: 2 GLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYT 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
LNIWDVGGQK++RSYWRNYFE TDGL+WVVDSSD R+ DC EL NLL EERLAG++LL
Sbjct: 62 LNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTI-RSHHWTIKGCSAVTGDNLLEGVDWLIDDIASRI 537
+ ANKQD+ GAL DEI LNL+++ +S HW I GCSA TG+ LLEG DWL+ DIASRI
Sbjct: 122 ILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
Query: 538 FSAD 549
+ D
Sbjct: 182 YMLD 185
>sp|Q19705|ARFM_CAEEL GTP-binding ADP-ribosylation factor homolog protein evl-20
Length = 184
Score = 240 bits (613), Expect = 2e-63
Identities = 113/183 (61%), Positives = 142/183 (77%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
G L IL+K + +E+E+RILILGLDNAGKTT++KKF E TI PTLGF IKT+ + F+
Sbjct: 2 GFLKILRKQRAREREMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQ 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
LN+WDVGGQKSLRSYW+NYFE+TD LIWVVDSSDR R+ C +EL LL EERLAGA+LL
Sbjct: 62 LNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASRIF 540
V ANK DLPGA+ ++ I L+L +I+SHHW I C A++GD L++ + WL DD+ SR+F
Sbjct: 122 VLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWLCDDVGSRLF 181
Query: 541 SAD 549
D
Sbjct: 182 ILD 184
>sp|Q09767|ARL_SCHPO ADP-ribosylation factor-like protein alp41 (Altered polarity
protein 41)
Length = 186
Score = 197 bits (500), Expect = 2e-50
Identities = 92/175 (52%), Positives = 127/175 (72%)
Frame = +1
Query: 1 GLLTILKKLKQKEKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKFK 180
GLLTIL++ K KE+EVR+L+LGLDNAGKTTI+K ED++ +SPT GF I+TLE +
Sbjct: 2 GLLTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLR 61
Query: 181 LNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATLL 360
IWD+GGQK+LR++W+NYFE+T+ +IWVVDS D R+++C L LLVEE+L ++L
Sbjct: 62 FTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSIL 121
Query: 361 VFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDI 525
V ANK D+ GAL +EI LN+ +S HW I SA+TG N+ + + WL +D+
Sbjct: 122 VLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176
>sp|P36405|ARL3_HUMAN ADP-ribosylation factor-like protein 3
Length = 182
Score = 196 bits (497), Expect = 5e-50
Identities = 94/179 (52%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 GLLTILKKLKQK-EKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKF 177
GLL+IL+KLK ++EVRIL+LGLDNAGKTT++K+ EDIS I+PT GF+IK+++ + F
Sbjct: 2 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 61
Query: 178 KLNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATL 357
KLN+WD+GGQ+ +R YW+NYFE TD LI+V+DS+DR R ++ +EL+ LL EE+L+ +
Sbjct: 62 KLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPV 121
Query: 358 LVFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASR 534
L+FANKQDL A EI LNL TIR W I+ CSA+TG+ + +G++W+ ++ ++
Sbjct: 122 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>sp|Q9WUL7|ARL3_MOUSE ADP-ribosylation factor-like protein 3
Length = 182
Score = 195 bits (495), Expect = 9e-50
Identities = 94/179 (52%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 GLLTILKKLKQK-EKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKF 177
GLL+IL+KLK ++EVRIL+LGLDNAGKTT++K+ EDIS I+PT GF+IK+++ + F
Sbjct: 2 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 61
Query: 178 KLNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATL 357
KLN+WD+GGQ+ +R YWR+YFE TD LI+V+DS+DR R ++ +EL+ LL EE+L+ +
Sbjct: 62 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 121
Query: 358 LVFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASR 534
L+FANKQDL A EI LNL TIR W I+ CSA+TG+ + +G++W+ ++ ++
Sbjct: 122 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>sp|P37996|ARL3_RAT ADP-ribosylation factor-like protein 3 (ARD3)
Length = 182
Score = 194 bits (494), Expect = 1e-49
Identities = 95/179 (53%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 GLLTILKKLKQK-EKEVRILILGLDNAGKTTIVKKFNGEDISTISPTLGFSIKTLEHRKF 177
GLL+IL+KLK ++EVRIL+LGLDNAGKTT++K+ EDIS I+PT GF+IK+++ + F
Sbjct: 2 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 61
Query: 178 KLNIWDVGGQKSLRSYWRNYFEATDGLIWVVDSSDRHRMKDCVKELSNLLVEERLAGATL 357
KLN+WD+GGQ+ +R YWR+YFE TD LI+V+DS+DR R ++ +EL+ LL EE+L+ +
Sbjct: 62 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 121
Query: 358 LVFANKQDLPGALGIDEIRTALNLDTIRSHHWTIKGCSAVTGDNLLEGVDWLIDDIASR 534
LVFANKQDL A EI LNL TIR W I+ CSA+TG+ + +G++W+ ++ ++
Sbjct: 122 LVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,160,387
Number of Sequences: 369166
Number of extensions: 1158227
Number of successful extensions: 5015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4921
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)