Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J14
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 555 e-158
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 554 e-157
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 553 e-157
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 550 e-156
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 550 e-156
sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin) 549 e-156
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 549 e-156
sp|P02554|TBB_PIG Tubulin beta chain 548 e-156
sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta) 548 e-156
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 548 e-156
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 555 bits (1429), Expect = e-158
Identities = 268/296 (90%), Positives = 275/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRA
Sbjct: 4 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPELTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 554 bits (1427), Expect = e-157
Identities = 267/296 (90%), Positives = 275/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRA
Sbjct: 4 IVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPELTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 553 bits (1424), Expect = e-157
Identities = 267/296 (90%), Positives = 274/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIGAKFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRA
Sbjct: 4 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPELTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 550 bits (1418), Expect = e-156
Identities = 266/296 (89%), Positives = 274/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRA
Sbjct: 4 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPF Q+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVP+LTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPDLTQQMFDAKNM 299
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 550 bits (1417), Expect = e-156
Identities = 266/296 (89%), Positives = 273/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRA
Sbjct: 4 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDAVLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREE+PDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPG APLTSRGSQQYR+LTVPELTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGLAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 445
Score = 549 bits (1415), Expect = e-156
Identities = 266/296 (89%), Positives = 273/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RINVYYNEASGGKYVPRA
Sbjct: 4 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSG FGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGAFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTP+YGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFD KNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDGKNM 299
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 549 bits (1414), Expect = e-156
Identities = 263/296 (88%), Positives = 275/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEA+GGKYVPRA
Sbjct: 4 IVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
+L+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPELTQQ+FDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNM 299
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 548 bits (1413), Expect = e-156
Identities = 263/296 (88%), Positives = 274/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G KYVPRA
Sbjct: 4 IVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
+L+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
+ESCDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 SESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPELTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
>sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta)
Length = 444
Score = 548 bits (1413), Expect = e-156
Identities = 265/296 (89%), Positives = 272/296 (91%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRA
Sbjct: 4 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDAVLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AESCDCLQGFQ K+REE+PDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFFMP FAPLTSRGSQQYR LTVPELTQQMFDAKNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFMPAFAPLTSRGSQQYRGLTVPELTQQMFDAKNM 299
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 548 bits (1413), Expect = e-156
Identities = 264/296 (89%), Positives = 273/296 (92%)
Frame = +1
Query: 1 IVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRA 180
IVHLQAGQCGNQIG+KFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEASGGKYVPRA
Sbjct: 4 IVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRA 63
Query: 181 VLIDLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKE 360
VL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE
Sbjct: 64 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE 123
Query: 361 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPY 540
AE CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPY
Sbjct: 124 AEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
Query: 541 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 720
NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
Sbjct: 184 NATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
Query: 721 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNM 888
GQLNADLRKLAVNMVPFPRLHFF+PGFAPLTSRG QQYRSLTVPELTQQMFD+KNM
Sbjct: 244 GQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGGQQYRSLTVPELTQQMFDSKNM 299
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,999,187
Number of Sequences: 369166
Number of extensions: 2158288
Number of successful extensions: 6246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5689
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)