Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J13
(440 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33625|TBA_EUGGR Tubulin alpha chain 164 6e-41
sp|P30436|TBA_ONCKE Tubulin alpha chain 164 1e-40
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 164 1e-40
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 164 1e-40
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 163 1e-40
sp|P33629|TBA_PRUDU Tubulin alpha chain 163 1e-40
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 163 1e-40
sp|P08537|TBA_XENLA Tubulin alpha chain 163 1e-40
sp|P46259|TBA1_PEA Tubulin alpha-1 chain 163 1e-40
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 163 1e-40
>sp|P33625|TBA_EUGGR Tubulin alpha chain
Length = 451
Score = 164 bits (416), Expect = 6e-41
Identities = 71/121 (58%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C LMYRG + PK+VN S+ IK K I+FVDWCPTGFK G+N QPP VPG ++A+
Sbjct: 312 YMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V M++NST+I E++ +I KFD+++SKR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMISNSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 164 bits (414), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG ++A+
Sbjct: 306 YMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 365
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 366 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 425
Query: 363 Y 365
Y
Sbjct: 426 Y 426
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 164 bits (414), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG ++A+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 164 bits (414), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG+++A+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF EAR+++ + D
Sbjct: 372 SRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 163 bits (413), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG ++A+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P33629|TBA_PRUDU Tubulin alpha chain
Length = 450
Score = 163 bits (413), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C LMYRG + PK+VN ++ IK K I+FVDWCPTGFK G+N QPP VPG ++A+
Sbjct: 312 YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V M++NSTS+ E++ +I KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 163 bits (413), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG ++A+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 163 bits (413), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG ++A+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P46259|TBA1_PEA Tubulin alpha-1 chain
Length = 452
Score = 163 bits (413), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C LMYRG + PK+VN ++ IK K I+FVDWCPTGFK G+N QPP VPG ++A+
Sbjct: 312 YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V M++NSTS+ E++ +I KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 163 bits (413), Expect = 1e-40
Identities = 69/121 (57%), Positives = 95/121 (78%)
Frame = +3
Query: 3 YMCCVLMYRGRITPKEVNQSIFEIKRKNEIKFVDWCPTGFKLGVNNQPPITVPGSEIAQS 182
YM C L+YRG + PK+VN +I IK K I+FVDWCPTGFK+G+N QPP VPG ++A+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 183 DRSVTMLANSTSIKEIWEKIMEKFDILFSKRSFVHWYVGEGMEEGEFNEARDEINGIYLD 362
R+V ML+N+T+I E W ++ KFD++++KR+FVHWYVGEGMEEGEF+EAR+++ + D
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 363 Y 365
Y
Sbjct: 432 Y 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,912,578
Number of Sequences: 369166
Number of extensions: 804132
Number of successful extensions: 3244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)