Planarian EST Database


Dr_sW_028_J12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_J12
         (323 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99LI8|HGS_MOUSE  Hepatocyte growth factor-regulated tyro...    61   7e-10
sp|O14964|HGS_HUMAN  Hepatocyte growth factor-regulated tyro...    61   7e-10
sp|Q9JJ50|HGS_RAT  Hepatocyte growth factor-regulated tyrosi...    61   7e-10
sp|Q960X8|HRS_DROME  Hepatocyte growth factor-regulated tyro...    60   2e-09
sp|Q8IWB7|WDFY1_HUMAN  WD repeat and FYVE domain containing ...    53   2e-07
sp|Q96P53|WDFY2_HUMAN  WD repeat and FYVE domain containing ...    49   3e-06
sp|Q8BUB4|WDFY2_MOUSE  WD repeat and FYVE domain containing ...    49   3e-06
sp|Q22712|YW91_CAEEL  Hypothetical protein T24A11.1 in chrom...    46   2e-05
sp|Q8BL66|EEA1_MOUSE  Early endosome antigen 1                     45   5e-05
sp|Q13615|MTMR3_HUMAN  Myotubularin-related protein 3 (FYVE ...    44   9e-05
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate
          Length = 775

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +2

Query: 5   CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESL 109
           CG IFC +C++K S IPK+GIEKEVRVCE CYE L
Sbjct: 185 CGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 219
>sp|O14964|HGS_HUMAN Hepatocyte growth factor-regulated tyrosine kinase substrate
           (Protein pp110) (Hrs)
          Length = 777

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +2

Query: 5   CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESL 109
           CG IFC +C++K S IPK+GIEKEVRVCE CYE L
Sbjct: 185 CGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 219
>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate
           (SNAP-25 interacting protein Hrs-2)
          Length = 776

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +2

Query: 5   CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESL 109
           CG IFC +C++K S IPK+GIEKEVRVCE CYE L
Sbjct: 185 CGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 219
>sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine kinase substrate
          Length = 760

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 22/37 (59%), Positives = 30/37 (81%)
 Frame = +2

Query: 2   NCGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESLR 112
           NCG +FC +CT K+  +PKYGIEKEVRVC+ C+ +L+
Sbjct: 182 NCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQ 218
>sp|Q8IWB7|WDFY1_HUMAN WD repeat and FYVE domain containing protein 1 (WD40- and
           FYVE-domain containing protein 1)
           (Phosphoinositide-binding protein 1) (FENS-1) (Zinc
           finger FYVE domain containing protein 17)
          Length = 410

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = +2

Query: 5   CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESLRGSDIHTGRITNQKGGH 160
           CG   C +C++KRS+ P  G E +VRVC+SCY+S++  D  T   T  +G H
Sbjct: 317 CGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDED-RTSLATFHEGKH 367
>sp|Q96P53|WDFY2_HUMAN WD repeat and FYVE domain containing protein 2 (WD40- and
           FYVE-domain containing protein 2) (Zinc finger FYVE
           domain containing protein 22)
          Length = 400

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 19/35 (54%), Positives = 27/35 (77%)
 Frame = +2

Query: 5   CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESL 109
           CG   C +C++KRS+IP  G E EVRVC+SC+E++
Sbjct: 317 CGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAI 351
>sp|Q8BUB4|WDFY2_MOUSE WD repeat and FYVE domain containing protein 2 (WD40- and
           FYVE-domain containing protein 2)
          Length = 400

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 19/35 (54%), Positives = 27/35 (77%)
 Frame = +2

Query: 5   CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESL 109
           CG   C +C++KRS+IP  G E EVRVC+SC+E++
Sbjct: 317 CGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAI 351
>sp|Q22712|YW91_CAEEL Hypothetical protein T24A11.1 in chromosome III
          Length = 938

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +2

Query: 2   NCGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESLRGSDIHTGRITN 145
           NCG + C++C+  R ++ + G   + R C+SCY+S+  +D+   R T+
Sbjct: 820 NCGRVVCEDCSKNRFSVIEEGKSVQKRACDSCYDSMHETDLKLSRATS 867
>sp|Q8BL66|EEA1_MOUSE Early endosome antigen 1
          Length = 1411

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +2

Query: 5    CGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESLRG 115
            CGNIFC EC+TK +  P    +K VRVC++C+  L+G
Sbjct: 1377 CGNIFCAECSTKNALTP--SSKKPVRVCDACFNDLQG 1411
>sp|Q13615|MTMR3_HUMAN Myotubularin-related protein 3 (FYVE domain-containing dual
            specificity protein phosphatase 1) (FYVE-DSP1) (Zinc
            finger FYVE domain containing protein 10)
          Length = 1198

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 2    NCGNIFCDECTTKRSNIPKYGIEKEVRVCESCYESL 109
            NCGN+FC  C  ++  +P   + +  RVC+SCY SL
Sbjct: 1143 NCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSL 1178
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,925,691
Number of Sequences: 369166
Number of extensions: 424600
Number of successful extensions: 1255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)