Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J07
(742 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RI56|OPTN_BRARE Optineurin 30 6.8
sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11 30 6.8
sp|O77448|TERT_TETTH Telomerase reverse transcriptase (Telo... 30 8.8
>sp|Q5RI56|OPTN_BRARE Optineurin
Length = 517
Score = 30.0 bits (66), Expect = 6.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 318 RENIDEVDDFIYRDKDEFGTRKTSREIENRVFRRSVRTL*NTIWDCVHT 172
+E E DF+ + +E TR + ++EN + V+ L + +C+HT
Sbjct: 58 KEKQKEERDFLEQRLEEARTRLNTMDVENEALKNQVKELEKSGAECLHT 106
>sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11
Length = 506
Score = 30.0 bits (66), Expect = 6.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 94 GNVRVDRSVAGA*HYILH*SSDSQCVCMNAVPNRVLQCTHRSPKHSILDFSRSLTCSKF 270
G VR+ G H +LH S +S+ + R++ CTH S + + +F L C+ F
Sbjct: 449 GTVRIWNFNTGEQHCVLHNSRNSRVFGLQFDHRRIIACTH-SSEILVWNFDDGLDCTFF 506
>sp|O77448|TERT_TETTH Telomerase reverse transcriptase (Telomerase catalytic subunit)
(Telomerase subunit P133)
Length = 1117
Score = 29.6 bits (65), Expect = 8.8
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -2
Query: 636 NLEHVRLRVKSSVSEICAYIVKHDLGLRSYKRIVSQKINEECSANSNY*DFLSASKNLLR 457
NLEH ++ V++ I I + L ++S ++ Q+IN+ + + + S KN LR
Sbjct: 862 NLEHFKISVQNECQWIGKSIDMNTLEIKSIQKQTQQEINQTINVAISIKNLKSQLKNKLR 921
Query: 456 KL 451
L
Sbjct: 922 SL 923
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,901,822
Number of Sequences: 369166
Number of extensions: 1310459
Number of successful extensions: 3248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3248
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)