Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J06
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34511|YMX3_CAEEL Hypothetical protein K06H7.3 in chromo... 50 5e-06
sp|Q9JIA3|IKBB_RAT NF-kappaB inhibitor beta (NF-kappa-BIB) ... 38 0.028
sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Min... 38 0.036
sp|Q60778|IKBB_MOUSE NF-kappaB inhibitor beta (NF-kappa-BIB... 36 0.10
sp|Q15653|IKBB_HUMAN NF-kappaB inhibitor beta (NF-kappa-BIB... 35 0.18
sp|Q9J503|V232_FOWPV Putative ankyrin repeat protein FPV232 35 0.18
sp|Q9J5H9|V022_FOWPV Putative ankyrin repeat protein FPV022 35 0.23
sp|Q5NVB9|ZDH13_PONPY Probable palmitoyltransferase ZDHHC13... 35 0.23
sp|Q804S5|MIB1_BRARE Ubiquitin ligase protein mib (Mind bom... 35 0.23
sp|Q4R690|ZDH13_MACFA Probable palmitoyltransferase ZDHHC13... 35 0.23
>sp|P34511|YMX3_CAEEL Hypothetical protein K06H7.3 in chromosome III
Length = 618
Score = 50.4 bits (119), Expect = 5e-06
Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 2/230 (0%)
Frame = -3
Query: 711 EDDIRTKLLNYVLNDSAEDLVPYLDELRLFKTADDISQLLSIPLKTRNQSFLHLAISHNN 532
+D+ R K NYV DS E L +L L T++ L + + +FLH++ +++
Sbjct: 391 DDEWRQKTYNYVRQDSVEALKEHLASLNEDVTSEANDYLRNAKIPPNRSTFLHVSAANDA 450
Query: 531 VNVLAHLLAS-GCDPLHRNVDNETPYAQAIRQRNKVACNVMSEYMFKNPTQYDYQAAKFP 355
L + L CD ++ PY+ + K ++ +Y KN T ++ P
Sbjct: 451 RKCLKYFLEEVNCDSSTKDGAGLPPYSSSANSDVK---SIFIDYRVKNETAGNWARTHIP 507
Query: 354 GGKDPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-SQRDQFLSLDNQSKI 178
K + + +R +++++ + K
Sbjct: 508 EPKKKVELTEEQEREQAERKKEKKARQKEKEKLKKEIAKRDVEEMEERQKYVNMSEREKR 567
Query: 177 NHLKLVEKSQKKRFLLCFQCALDISDVVPFSYSDYSFCGMECLKKHRILN 28
+ L C QC + + PF YS Y+FC C+ +HR N
Sbjct: 568 ALAVDRRLAGLPPILRCHQCGVQLPPT-PFQYSHYNFCSTSCVAEHRKAN 616
>sp|Q9JIA3|IKBB_RAT NF-kappaB inhibitor beta (NF-kappa-BIB) (I-kappa-B-beta)
(IkappaBbeta) (IKB-beta) (IKB-B)
Length = 359
Score = 38.1 bits (87), Expect = 0.028
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = -3
Query: 594 LSIPLKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNV 415
L+ P T ++ LHLA+ VLA LL +G DP R TP A+ + N V +
Sbjct: 233 LNKPEPTCGRTPLHLAVEGQAAGVLALLLKAGADPTARMYGGRTPLGSALLRPNPVLARL 292
Query: 414 MSEYMFKNPTQYD 376
+ + P D
Sbjct: 293 LRAHGAPEPEDKD 305
>sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Mind bomb homolog) (D-mib)
Length = 1226
Score = 37.7 bits (86), Expect = 0.036
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = -3
Query: 573 RNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNVMSEY 403
R Q+ LH+A++ ++NV+ LL GC P ++ + +TP AI + + +++ ++
Sbjct: 633 RRQTSLHIAVNKGHLNVVKTLLTLGCHPSLQDSEGDTPLHDAISKEHDEMLSLLLDF 689
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 567 QSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIR 442
Q+ LHLA+ +V ++ L+ G D + D +TP +A+R
Sbjct: 771 QTALHLAVERQHVQIVKLLVQDGADLNIPDKDGDTPLHEALR 812
>sp|Q60778|IKBB_MOUSE NF-kappaB inhibitor beta (NF-kappa-BIB) (I-kappa-B-beta)
(IkappaBbeta) (IKB-beta) (IKB-B)
Length = 359
Score = 36.2 bits (82), Expect = 0.10
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -3
Query: 594 LSIPLKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNV 415
L+ P T ++ LHLA+ +VL LL +G DP R TP A+ + N + +
Sbjct: 233 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 292
Query: 414 MSEYMFKNPTQYD 376
+ + P D
Sbjct: 293 LRAHGAPEPEDED 305
>sp|Q15653|IKBB_HUMAN NF-kappaB inhibitor beta (NF-kappa-BIB) (I-kappa-B-beta)
(IkappaBbeta) (IKB-beta) (IKB-B) (Thyroid
receptor-interacting protein 9) (TR-interacting protein
9)
Length = 356
Score = 35.4 bits (80), Expect = 0.18
Identities = 23/98 (23%), Positives = 40/98 (40%)
Frame = -3
Query: 636 ELRLFKTADDISQLLSIPLKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPY 457
++ + + D L P T +S LHLA+ +VL LL +G +P R TP
Sbjct: 219 DVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPL 278
Query: 456 AQAIRQRNKVACNVMSEYMFKNPTQYDYQAAKFPGGKD 343
A+ + N + ++ + P D ++ D
Sbjct: 279 GSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSSSSD 316
>sp|Q9J503|V232_FOWPV Putative ankyrin repeat protein FPV232
Length = 482
Score = 35.4 bits (80), Expect = 0.18
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Frame = -3
Query: 759 DEENEKIIDIFPPTKEEDD-IRTKLLNYVLNDSAEDLVPYLDELRLFKTADDISQLLSIP 583
++ N I D+ T + DD I TK++ +L A+ + D+L KTA
Sbjct: 124 NDGNRTIDDVQLCTIDYDDSIDTKIIKLLLAYGADTKIKTEDKL---KTA---------- 170
Query: 582 LKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNVMSEY 403
LH A ++ N + +LL G + ++ N +P +A+R RN+ ++ +Y
Sbjct: 171 --------LHYASTNKNYKLAEYLLIYGAEVNSPDIGNNSPMHEAVRHRNEDVVKILLQY 222
>sp|Q9J5H9|V022_FOWPV Putative ankyrin repeat protein FPV022
Length = 578
Score = 35.0 bits (79), Expect = 0.23
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 609 DISQLLSIP---LKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQ 439
++ ++LS+ L T + LH A+ + + +LL GCDP + + +P AI++
Sbjct: 207 EVLKILSLDRDILGTEGTTALHYAVEAERLEAVRYLLDIGCDPKVLDEHSVSPLYYAIKR 266
Query: 438 RNKVACNVMSEY 403
+NK+ + + ++
Sbjct: 267 KNKIILDELIKF 278
>sp|Q5NVB9|ZDH13_PONPY Probable palmitoyltransferase ZDHHC13 (Zinc finger DHHC
domain-containing protein 13) (DHHC-13)
Length = 622
Score = 35.0 bits (79), Expect = 0.23
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -3
Query: 594 LSIPLKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNV 415
L++ K + LH A++ NVN + LL +G +NV ETP A++ +N++ ++
Sbjct: 209 LNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGSSLDIQNVKGETPLDMALQNKNQLIIHM 268
Query: 414 M 412
+
Sbjct: 269 L 269
>sp|Q804S5|MIB1_BRARE Ubiquitin ligase protein mib (Mind bomb protein)
Length = 1030
Score = 35.0 bits (79), Expect = 0.23
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -3
Query: 573 RNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNVMSE 406
R Q+ LH+A++ ++ V+ LL GC P ++ + +TP AI ++ +V+ E
Sbjct: 529 RRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDMLSVLLE 584
>sp|Q4R690|ZDH13_MACFA Probable palmitoyltransferase ZDHHC13 (Zinc finger DHHC
domain-containing protein 13) (DHHC-13)
Length = 622
Score = 35.0 bits (79), Expect = 0.23
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -3
Query: 594 LSIPLKTRNQSFLHLAISHNNVNVLAHLLASGCDPLHRNVDNETPYAQAIRQRNKVACNV 415
L++ K + LH A++ NVN + LL +G +NV ETP A++ +N++ ++
Sbjct: 209 LNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGSSLDIQNVKGETPLDMALQNKNQLIIHM 268
Query: 414 M 412
+
Sbjct: 269 L 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,961,341
Number of Sequences: 369166
Number of extensions: 1243174
Number of successful extensions: 3697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3695
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)