Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J04
(386 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q63199|TNR6_RAT Tumor necrosis factor receptor superfami... 30 1.3
sp|Q6LQ00|CBIO_PHOPR Putative cobalt import ATP-binding pro... 30 1.7
sp|P12021|MUCAP_PIG Apomucin (Mucin core protein) 30 2.2
sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity prote... 29 3.8
sp|P01484|SCX2_ANDAU Neurotoxin 2 precursor (Neurotoxin II)... 29 3.8
sp|Q22710|NAS26_CAEEL Zinc metalloproteinase nas-26 precurs... 29 3.8
sp|P05659|MYSN_ACACA Myosin II heavy chain, non muscle 29 3.8
sp|Q7T3Q2|CRIM1_BRARE Cysteine-rich motor neuron 1 protein ... 29 3.8
sp|P01485|SCX3_BUTOC Neurotoxin 3 (Neurotoxin III) (Bot III... 29 3.8
sp|P59355|SCX2_LEIQH Neurotoxin Lqh II (LqhII) (Lqh2) 29 3.8
>sp|Q63199|TNR6_RAT Tumor necrosis factor receptor superfamily member 6 precursor (FASL
receptor) (Apoptosis-mediating surface antigen FAS)
(Apo-1 antigen) (CD95 antigen)
Length = 324
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 146 GCYQPA-YCPNSCTGFQGELHAVGTSWGSPACH-CTKGEE 259
G YQ +C C + ++ TS G+P CH CT+GEE
Sbjct: 47 GLYQVGPFCCQPCQPGERKVKDCTTSGGAPTCHPCTEGEE 86
>sp|Q6LQ00|CBIO_PHOPR Putative cobalt import ATP-binding protein cbiO
Length = 564
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/73 (23%), Positives = 36/73 (49%)
Frame = -1
Query: 284 FHHSRLQDLLLL*YNDKQGCPMMFLLHEVHLEIQYSYSDNKQVDSIQFHQAVLHYSRVFQ 105
+HH L + N K G ++ + H++HL ++Y+ +S A + + +F
Sbjct: 465 YHHYTLMMEFVRELNRKLGITILIISHDMHLVLEYTQRAIVIANSQLLADAPV--NTIFS 522
Query: 104 IPVIVHRSNLYIT 66
P ++ ++NL +T
Sbjct: 523 QPALLEKANLTVT 535
>sp|P12021|MUCAP_PIG Apomucin (Mucin core protein)
Length = 1150
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 140 ETGCYQPAYCPNSCTGFQGELHAVGTSWGSPACHCTKGEEGPEVDCDGK 286
+TGC P P C G GE + G W + CH E VDC K
Sbjct: 918 KTGCPAPLPPPPVCHGPLGEEKSPGDVW-TANCHKCTCTEAKTVDCKPK 965
>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan precursor (Starry night
protein) (Flamingo protein)
Length = 3579
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 140 ETGCYQPAYCPNSCTGFQGELHAVGTSWGSPACHCTKGEEGPEVDC 277
E GC A CP+ C + +SW C C G G DC
Sbjct: 1960 EDGCESRAQCPDHCPNHS----SCQSSWDLSTCECDSGYVG--TDC 1999
>sp|P01484|SCX2_ANDAU Neurotoxin 2 precursor (Neurotoxin II) (AaH II) (AaHII) (AaH2)
Length = 85
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 149 CYQPAYCPNSCTGFQGELHAVGTSWGSP---ACHCTK 250
C + AYC CT +GE + W SP AC+C K
Sbjct: 35 CGRNAYCNEECTKLKGE--SGYCQWASPYGNACYCYK 69
>sp|Q22710|NAS26_CAEEL Zinc metalloproteinase nas-26 precursor (Nematode astacin 26)
(Tollish protein 1)
Length = 414
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 YCPNSCTGFQGELHAVGTSWGSP----ACHCTKGEEGPE 268
YCPN+C G + L+ + + P C C +G GP+
Sbjct: 262 YCPNACQG-RNHLNCLAGGYPDPNNCNVCRCPEGLGGPD 299
>sp|P05659|MYSN_ACACA Myosin II heavy chain, non muscle
Length = 1509
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 47 QSSSITMLCINYSDEQLQEF 106
Q +S LCINY++E+LQ+F
Sbjct: 464 QHNSFEQLCINYTNEKLQQF 483
>sp|Q7T3Q2|CRIM1_BRARE Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1027
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +2
Query: 101 EFEKLGCNVKPLGE--TGCYQPAYCPNSCTGFQGELHAVGTSW--GSPACHCTKGEE 259
+ ++LGC + + + PA SC G H G SW G C+C G E
Sbjct: 575 QHDELGCLICQCRDQSSSSVTPAVKLGSCLSMDGRRHENGQSWHDGCRDCYCHAGRE 631
>sp|P01485|SCX3_BUTOC Neurotoxin 3 (Neurotoxin III) (Bot III) (BotIII)
Length = 64
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 149 CYQPAYCPNSCTGFQGELHAVGTSWGSP---ACHCTK 250
C + AYC CT +GE + W SP AC+C K
Sbjct: 16 CGRNAYCNEECTKLKGE--SGYCQWASPYGNACYCYK 50
>sp|P59355|SCX2_LEIQH Neurotoxin Lqh II (LqhII) (Lqh2)
Length = 64
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 149 CYQPAYCPNSCTGFQGELHAVGTSWGSP---ACHCTK 250
C + AYC CT +GE + W SP AC+C K
Sbjct: 16 CGRNAYCNEECTKLKGE--SGYCQWASPYGNACYCYK 50
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,169,490
Number of Sequences: 369166
Number of extensions: 685426
Number of successful extensions: 1722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)