Planarian EST Database


Dr_sW_028_J03

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_J03
         (788 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26599|PTBP1_HUMAN  Polypyrimidine tract-binding protein ...   228   2e-59
sp|Q00438|PTBP1_RAT  Polypyrimidine tract-binding protein 1 ...   225   1e-58
sp|Q8BHD7|ROD1_MOUSE  Regulator of differentiation 1 (Rod1)       224   2e-58
sp|Q9Z118|ROD1_RAT  Regulator of differentiation 1 (Rod1)         224   2e-58
sp|O95758|ROD1_HUMAN  Regulator of differentiation 1 (Rod1)       224   3e-58
sp|Q29099|PTBP1_PIG  Polypyrimidine tract-binding protein 1 ...   223   4e-58
sp|P17225|PTBP1_MOUSE  Polypyrimidine tract-binding protein ...   196   6e-50
sp|Q8R081|HNRPL_MOUSE  Heterogeneous nuclear ribonucleoprote...    82   2e-15
sp|P14866|HNRPL_HUMAN  Heterogeneous nuclear ribonucleoprote...    80   5e-15
sp|Q8WVV9|HNRLL_HUMAN  Heterogeneous nuclear ribonucleoprote...    75   2e-13
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
           protein PPTB-1)
          Length = 531

 Score =  228 bits (580), Expect = 2e-59
 Identities = 113/196 (57%), Positives = 143/196 (72%), Gaps = 1/196 (0%)
 Frame = +1

Query: 151 SGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRN 330
           +GNSV+LV+NLN E+  P +LF LFGVYGDV RVK++FNKK  ALVQ A+  QA  A+ +
Sbjct: 334 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH 393

Query: 331 LDACFLWGKQMHLHVSKTNVIQLPME-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPS 507
           L+   L GK + + +SK   +QLP E   + GLTKDY NS LHRFKKP SKN+QNIFPPS
Sbjct: 394 LNGHKLHGKPIRITLSKHQNVQLpreGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 453

Query: 508 AVLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHN 687
           A LHLSNIPP+  E DL  +  S+G  +K FKF   D+KMAL+++ SVE+A+  LID HN
Sbjct: 454 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 513

Query: 688 HKLSEKNHLRISFSKA 735
           H L E +HLR+SFSK+
Sbjct: 514 HDLGENHHLRVSFSKS 529
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding
           protein) (PYBP)
          Length = 555

 Score =  225 bits (573), Expect = 1e-58
 Identities = 110/196 (56%), Positives = 143/196 (72%), Gaps = 1/196 (0%)
 Frame = +1

Query: 151 SGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRN 330
           +GNSV+LV+NLN E+  P +LF LFGVYGDV RVK++FNKK  ALV+ A+  QA  A+ +
Sbjct: 358 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSH 417

Query: 331 LDACFLWGKQMHLHVSKTNVIQLPME-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPS 507
           L+   L GK + + +SK   +QLP E   + GLTKDY +S LHRFKKP SKN+QNIFPPS
Sbjct: 418 LNGHKLHGKSVRITLSKHQSVQLpreGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPS 477

Query: 508 AVLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHN 687
           A LHLSNIPP+  E DL  +  S+G  +K FKF   D+KMAL+++ SVE+A+  LI+ HN
Sbjct: 478 ATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHN 537

Query: 688 HKLSEKNHLRISFSKA 735
           H L E +HLR+SFSK+
Sbjct: 538 HDLGENHHLRVSFSKS 553
>sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 (Rod1)
          Length = 523

 Score =  224 bits (571), Expect = 2e-58
 Identities = 113/195 (57%), Positives = 138/195 (70%), Gaps = 1/195 (0%)
 Frame = +1

Query: 154 GNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNL 333
           GNSV+LVTNLN +   P  LF LFGVYGDV RVK+MFNKK  ALVQ A+  QA  A+ +L
Sbjct: 327 GNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHL 386

Query: 334 DACFLWGKQMHLHVSKTNVIQLPME-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSA 510
               L+GK +   +SK   +QLP E   + GLTKD+SNS LHRFKKP SKN+QNIFPPSA
Sbjct: 387 SGQRLYGKVLRATLSKHQAVQLpreGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSA 446

Query: 511 VLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHNH 690
            LHLSNIPP+    DL  +   +G  +K FKF   D+KMAL++L SVE+AI  LI+ HNH
Sbjct: 447 TLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506

Query: 691 KLSEKNHLRISFSKA 735
            L E +HLR+SFSK+
Sbjct: 507 DLGENHHLRVSFSKS 521
>sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 (Rod1)
          Length = 523

 Score =  224 bits (571), Expect = 2e-58
 Identities = 113/195 (57%), Positives = 138/195 (70%), Gaps = 1/195 (0%)
 Frame = +1

Query: 154 GNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNL 333
           GNSV+LVTNLN +   P  LF LFGVYGDV RVK+MFNKK  ALVQ A+  QA  A+ +L
Sbjct: 327 GNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHL 386

Query: 334 DACFLWGKQMHLHVSKTNVIQLPME-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSA 510
               L+GK +   +SK   +QLP E   + GLTKD+SNS LHRFKKP SKN+QNIFPPSA
Sbjct: 387 SGQRLYGKVLRATLSKHQAVQLpreGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSA 446

Query: 511 VLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHNH 690
            LHLSNIPP+    DL  +   +G  +K FKF   D+KMAL++L SVE+AI  LI+ HNH
Sbjct: 447 TLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506

Query: 691 KLSEKNHLRISFSKA 735
            L E +HLR+SFSK+
Sbjct: 507 DLGENHHLRVSFSKS 521
>sp|O95758|ROD1_HUMAN Regulator of differentiation 1 (Rod1)
          Length = 521

 Score =  224 bits (570), Expect = 3e-58
 Identities = 113/195 (57%), Positives = 138/195 (70%), Gaps = 1/195 (0%)
 Frame = +1

Query: 154 GNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNL 333
           GNSV+LVTNLN +   P  LF LFGVYGDV RVK+MFNKK  ALVQ A+  QA  A+ +L
Sbjct: 325 GNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHL 384

Query: 334 DACFLWGKQMHLHVSKTNVIQLPME-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSA 510
               L+GK +   +SK   +QLP E   + GLTKD+SNS LHRFKKP SKN+QNIFPPSA
Sbjct: 385 SGQRLYGKVLRATLSKHQAVQLpreGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSA 444

Query: 511 VLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHNH 690
            LHLSNIPP+    DL  +   +G  +K FKF   D+KMAL++L SVE+AI  LI+ HNH
Sbjct: 445 TLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 504

Query: 691 KLSEKNHLRISFSKA 735
            L E +HLR+SFSK+
Sbjct: 505 DLGENHHLRVSFSKS 519
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  223 bits (569), Expect = 4e-58
 Identities = 113/196 (57%), Positives = 142/196 (72%), Gaps = 1/196 (0%)
 Frame = +1

Query: 151 SGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRN 330
           +GNSV+LV+NLN E+  P +LF LFGVY DV RVK++FNKK  ALVQ A+  QA  A+ +
Sbjct: 360 AGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSH 419

Query: 331 LDACFLWGKQMHLHVSKTNVIQLPME-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPS 507
           L+   L GK + + +SK   +QLP E   + GLTKDY NS LHRFKKP SKN+QNIFPPS
Sbjct: 420 LNGHKLHGKPVRITLSKHQNVQLpreGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 479

Query: 508 AVLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHN 687
           A LHLSNIPP+  E DL  +  S+G  +K FKF   D+KMAL+++ SVE+AI  LID HN
Sbjct: 480 ATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHN 539

Query: 688 HKLSEKNHLRISFSKA 735
           H L E +HLR+SFSK+
Sbjct: 540 HDLGENHHLRVSFSKS 555
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score =  196 bits (498), Expect = 6e-50
 Identities = 102/195 (52%), Positives = 128/195 (65%)
 Frame = +1

Query: 151 SGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRN 330
           +GNSV+LV+NLN E+  P +LF LFGVYGDV RVK++FNKK  ALVQ A+  QA      
Sbjct: 332 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPP 391

Query: 331 LDACFLWGKQMHLHVSKTNVIQLPMEDANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSA 510
             A        H  V  +          + GLTKDY +S L RFKKP SKN+QNIFPPSA
Sbjct: 392 ERAQAAREVSAHYTVQASECAAAREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSA 450

Query: 511 VLHLSNIPPTTGEGDLSEMIRSSGFEIKKFKFLPNDKKMALLELNSVEDAIHVLIDFHNH 690
            LHLSNIPP+  E DL  +  S+G  +K FKF   D+KMAL+++ SVE+A+  LI+ HNH
Sbjct: 451 TLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 510

Query: 691 KLSEKNHLRISFSKA 735
            L E +HLR+SFSK+
Sbjct: 511 DLGENHHLRVSFSKS 525
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 555

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 15/213 (7%)
 Frame = +1

Query: 142 GIDSGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTA 321
           G  + + V++V  L+  K N D +F +F +YG+V +VK M +K   A+V+ A+      A
Sbjct: 342 GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRA 401

Query: 322 IRNLDACFLWGKQMHLHVSKTNVIQLPMEDANHGLT------KDYSNSTLHRFKKPNSKN 483
           I +L+  F++G++M++ VSK   I   M   ++GL       KD+S S  +RF  P    
Sbjct: 402 ITHLNNNFMFGQKMNVCVSKQPAI---MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAA 458

Query: 484 YQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSGFE----IKKFKFLPNDKKMALLELNSV 651
              I  PS VLH  N P    E +  E+    G +    +K F          LLE +S 
Sbjct: 459 KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSK 518

Query: 652 EDAIHVLIDFHNHKLSEKN-----HLRISFSKA 735
            DA+  L   +++++   N      L++ FS A
Sbjct: 519 SDALETLGFLNHYQMKNPNGPYPYTLKLCFSTA 551

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
 Frame = +1

Query: 52  CNQMNHRSTDQ----SNWGFGSNQTQSSMFSSNTGIDSG--NSVVLVTNLNAEKS-NPDA 210
           CN +N+ + +Q     +  F +  T   +       DS   NSV+L T LN   S   D 
Sbjct: 117 CNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDV 176

Query: 211 LFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNV 390
           L+T+    G V R+ +       A+V+F + Q A  A  +L+   ++     L +     
Sbjct: 177 LYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKP 236

Query: 391 IQLPMEDANHGLTKDYSNSTLHRFKKPNSK-NYQNIFPP 504
            +L +   N   T DY+N  L     P S  N +   PP
Sbjct: 237 TRLNV-FKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPP 274
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 558

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 15/213 (7%)
 Frame = +1

Query: 142 GIDSGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTA 321
           G  + + V++V  L+  K N D +F +F +YG+V +VK M +K   A+V+ A+      A
Sbjct: 345 GPHADSPVLMVYGLDQSKMNGDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRA 404

Query: 322 IRNLDACFLWGKQMHLHVSKTNVIQLPMEDANHGLT------KDYSNSTLHRFKKPNSKN 483
           I +L+  F++G+++++ VSK   I   M   ++GL       KD+S S  +RF  P    
Sbjct: 405 ITHLNNNFMFGQKLNVCVSKQPAI---MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAA 461

Query: 484 YQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSGFE----IKKFKFLPNDKKMALLELNSV 651
              I  PS VLH  N P    E +  E+    G +    +K F          LLE  S 
Sbjct: 462 KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESK 521

Query: 652 EDAIHVLIDFHNHKLSEKN-----HLRISFSKA 735
            DA+  L   +++++   N      L++ FS A
Sbjct: 522 SDALETLGFLNHYQMKNPNGPYPYTLKLCFSTA 554

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
 Frame = +1

Query: 52  CNQMNHRSTDQ----SNWGFGSNQTQSSMFSSNTGIDSG--NSVVLVTNLNAEKS-NPDA 210
           CN +N+ + +Q     +  F +  T   +       DS   NSV+L T LN   S   D 
Sbjct: 120 CNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDV 179

Query: 211 LFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNV 390
           L+T+    G V R+ +       A+V+F + Q A  A  +L+   ++     L +     
Sbjct: 180 LYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKP 239

Query: 391 IQLPMEDANHGLTKDYSNSTLHRFKKPNSK-NYQNIFPP 504
            +L +   N   T DY+N  L     P S  N +   PP
Sbjct: 240 TRLNV-FKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPP 277
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like (Stromal
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
 Frame = +1

Query: 115 QSSMFSSNTGIDSGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQF 294
           Q+S    + G  SG SVV+V+ L+  K N   +F LF +YG++ +VK M     TALV+ 
Sbjct: 321 QASSSYMHGGNPSG-SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEM 379

Query: 295 ANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQ----LPMEDANHGLTKDYSNSTLHRF 462
            +      A+ +L+   L+GK++++ VSK + +       +ED      KD++ S  +RF
Sbjct: 380 GDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSY-KDFAMSKNNRF 438

Query: 463 KKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRS----SGFEIKKFKFLPNDKKMA 630
                 +   I PPS VLH  N+P    E   +++       +  + K F   P+ K ++
Sbjct: 439 TSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLS 498

Query: 631 -LLELNSVEDAIHVLIDFHNHKLSEKN 708
            LLE     DA+  L   +++++   N
Sbjct: 499 GLLEWECKTDAVEALTALNHYQIRVPN 525
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,022,148
Number of Sequences: 369166
Number of extensions: 1792959
Number of successful extensions: 4503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4491
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)