Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_I24
(750 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26065|ACT_PLAMG Actin, adductor muscle 492 e-139
sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3) 491 e-139
sp|P30163|ACT2_ONCVO Actin-2 491 e-139
sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cyt... 491 e-138
sp|P41340|ACT3_LIMPO Actin-3 491 e-138
sp|P92176|ACT2_LUMTE Actin-2 491 e-138
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 491 e-138
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 491 e-138
sp|O42161|ACTB_SALSA Actin, cytoplasmic 1 (Beta-actin) 490 e-138
sp|P68143|ACTB_OREMO Actin, cytoplasmic 1 (Beta-actin) >gi|... 490 e-138
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 492 bits (1266), Expect = e-139
Identities = 240/249 (96%), Positives = 246/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEN 226
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TA++SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 227 EMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKC 286
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 287 DVDIRKDLY 295
>sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3)
Length = 375
Score = 491 bits (1265), Expect = e-139
Identities = 240/249 (96%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPI
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 166 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 225
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TAS+SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 226 EMATASSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKC 285
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 286 DVDIRKDLY 294
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 491 bits (1264), Expect = e-139
Identities = 238/249 (95%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 226
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TA++SSSLEKSYELPDGQVIT+GNERFRCPEALFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 227 EMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC 286
Query: 722 DVDIRKDLY 748
D+DIRKDLY
Sbjct: 287 DIDIRKDLY 295
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cytoplasmic beta actin)
Length = 375
Score = 491 bits (1263), Expect = e-138
Identities = 239/249 (95%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPI
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 166 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 225
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 226 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKC 285
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 286 DVDIRKDLY 294
>sp|P41340|ACT3_LIMPO Actin-3
Length = 376
Score = 491 bits (1263), Expect = e-138
Identities = 239/249 (95%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDFD
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFDQ 226
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 227 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKC 286
Query: 722 DVDIRKDLY 748
D+DIRKDLY
Sbjct: 287 DIDIRKDLY 295
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 491 bits (1263), Expect = e-138
Identities = 240/249 (96%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 226
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TASASSSLEKSYELPDGQVITIGNERFRCPEA+F SFLG+ESVGIHETTYNSIMKC
Sbjct: 227 EMNTASASSSLEKSYELPDGQVITIGNERFRCPEAMFHASFLGMESVGIHETTYNSIMKC 286
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 287 DVDIRKDLY 295
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 491 bits (1263), Expect = e-138
Identities = 238/249 (95%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 167 YEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 226
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG+E+ GIHETTYNSIMKC
Sbjct: 227 EMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKC 286
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 287 DVDIRKDLY 295
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 491 bits (1263), Expect = e-138
Identities = 238/249 (95%), Positives = 246/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 167 YEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 226
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM+TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+E+ GIHETTYNSIMKC
Sbjct: 227 EMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAAGIHETTYNSIMKC 286
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 287 DVDIRKDLY 295
>sp|O42161|ACTB_SALSA Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 490 bits (1262), Expect = e-138
Identities = 239/249 (95%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPI
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 166 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 225
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 226 EMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKC 285
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 286 DVDIRKDLY 294
>sp|P68143|ACTB_OREMO Actin, cytoplasmic 1 (Beta-actin)
sp|P68142|ACT1_FUGRU Actin, cytoplasmic 1 (Beta-actin-1)
Length = 375
Score = 490 bits (1262), Expect = e-138
Identities = 239/249 (95%), Positives = 245/249 (98%)
Frame = +2
Query: 2 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 181
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 182 TEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 361
TEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPI
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
Query: 362 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDA 541
YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+
Sbjct: 166 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 225
Query: 542 EMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIHETTYNSIMKC 721
EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIHETTYNSIMKC
Sbjct: 226 EMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKC 285
Query: 722 DVDIRKDLY 748
DVDIRKDLY
Sbjct: 286 DVDIRKDLY 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,499,942
Number of Sequences: 369166
Number of extensions: 1675227
Number of successful extensions: 5386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5260
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)