Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_028_I14 (805 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 500 e-141 sp|P30883|TBB4_XENLA Tubulin beta-4 chain 500 e-141 sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin) 500 e-141 sp|P02554|TBB_PIG Tubulin beta chain 500 e-141 sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 500 e-141 sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 498 e-141 sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 498 e-141 sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 498 e-141 sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 497 e-140 sp|P61858|TBB2_DROHY Tubulin beta-2 chain (Beta-2 tubulin) ... 497 e-140
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) Length = 447 Score = 500 bits (1288), Expect = e-141 Identities = 243/246 (98%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain Length = 445 Score = 500 bits (1288), Expect = e-141 Identities = 243/246 (98%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin) Length = 341 Score = 500 bits (1288), Expect = e-141 Identities = 243/246 (98%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 80 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 139 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 140 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 199 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 200 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 259 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 260 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 319 Query: 788 FLHWYT 805 FLHWYT Sbjct: 320 FLHWYT 325
>sp|P02554|TBB_PIG Tubulin beta chain Length = 445 Score = 500 bits (1287), Expect = e-141 Identities = 243/246 (98%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain) Length = 445 Score = 500 bits (1287), Expect = e-141 Identities = 243/246 (98%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) Length = 445 Score = 498 bits (1283), Expect = e-141 Identities = 242/246 (98%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) Length = 445 Score = 498 bits (1282), Expect = e-141 Identities = 241/246 (97%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II) Length = 445 Score = 498 bits (1282), Expect = e-141 Identities = 241/246 (97%), Positives = 246/246 (100%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV Sbjct: 274 TSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) Length = 447 Score = 497 bits (1279), Expect = e-140 Identities = 240/246 (97%), Positives = 245/246 (99%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNT+SVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVS TMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLN+ Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNI 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKA Sbjct: 334 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
>sp|P61858|TBB2_DROHY Tubulin beta-2 chain (Beta-2 tubulin) sp|P61857|TBB2_DROME Tubulin beta-2 chain (Beta-2 tubulin) Length = 446 Score = 497 bits (1279), Expect = e-140 Identities = 241/246 (97%), Positives = 245/246 (99%) Frame = +2 Query: 68 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFR 247 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFR Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 213 Query: 248 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 427 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL Sbjct: 214 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273 Query: 428 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAALFRGRMSMKEVDEQMLNV 607 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLN+ Sbjct: 274 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNI 333 Query: 608 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 787 QNKNSS+FVEWIPNN KTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA Sbjct: 334 QNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKA 393 Query: 788 FLHWYT 805 FLHWYT Sbjct: 394 FLHWYT 399
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,101,039 Number of Sequences: 369166 Number of extensions: 1968337 Number of successful extensions: 5447 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5254 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 7618580670 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)