Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H22
(323 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00402|NUM1_YEAST Nuclear migration protein NUM1 30 1.3
sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mi... 30 2.2
sp|Q9PA86|RPOB_XYLFA DNA-directed RNA polymerase beta chain... 30 2.2
sp|Q87A32|RPOB_XYLFT DNA-directed RNA polymerase beta chain... 30 2.2
sp|Q9WTR8|PHLPP_RAT PH domain leucine-rich repeat protein p... 29 3.8
sp|P35208|SPT10_YEAST SPT10 protein 29 3.8
sp|P14075|ENV_HTL1C Env polyprotein precursor [Contains: Su... 28 5.0
sp|Q24742|TRX_DROVI Trithorax protein 28 5.0
sp|P03381|ENV_HTL1A Env polyprotein precursor [Contains: Su... 28 8.5
sp|P23064|ENV_HTL1M Env polyprotein precursor [Contains: Su... 28 8.5
>sp|Q00402|NUM1_YEAST Nuclear migration protein NUM1
Length = 2748
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 165 REPTNKQTRSAATRESIRETQEEPSLLSRVLIDDDRILTVIRSVSFNYIKYLS 323
+E K + + ++ E+ SLL++VL+D D T+ RS+ I +LS
Sbjct: 1938 KEDDYKNILAVSEHPTVIHLSEKASLLNKVLVDKDDFATMSRSIEKPTIDFLS 1990
>sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (hTid-1)
Length = 480
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 7 QRALLLALAEQDESA-GMINGVTMTANGKQAIDDT 108
Q++L+L+ AE + G +NGVT+T++G +D +
Sbjct: 420 QQSLILSYAEDETDVEGTVNGVTLTSSGGSTMDSS 454
>sp|Q9PA86|RPOB_XYLFA DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1388
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 1 ETQRALLLALAEQDESAGMINGVTMTANGKQAIDDTDQFLLSQIRMVLKQHEN 159
E R L+ L E + +I G+ NG+ +DD D ++R V + EN
Sbjct: 442 EESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGNRRVRSVGEMAEN 494
>sp|Q87A32|RPOB_XYLFT DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1388
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 1 ETQRALLLALAEQDESAGMINGVTMTANGKQAIDDTDQFLLSQIRMVLKQHEN 159
E R L+ L E + +I G+ NG+ +DD D ++R V + EN
Sbjct: 442 EESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGNRRVRSVGEMAEN 494
>sp|Q9WTR8|PHLPP_RAT PH domain leucine-rich repeat protein phosphatase (Pleckstrin
homology domain containing family E protein 1)
(Suprachiasmatic nucleus circadian oscillatory protein)
Length = 1696
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 100 DDTDQFLL-----SQIRMVLKQHENTDANQPTNKQDQQQHENPSEKLKKNQA 240
D DQF++ +++ ++K H+ Q +Q QQQ P + + QA
Sbjct: 1622 DPDDQFIIPPELEEEVKEIMKHHQEQQQQQQQQQQQQQQQPPPPPQPPQAQA 1673
>sp|P35208|SPT10_YEAST SPT10 protein
Length = 640
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 55 MINGVTMTANGKQAIDDTDQFLLSQIRMVLKQH--ENTDANQPTNKQDQQQH 204
++NG MT GK+ I DTDQ QI++ L+ H E+ N+ T+K ++ H
Sbjct: 324 VLNGKLMT-KGKEIIYDTDQ----QIQIALEIHLMEHLGINKVTSKIGEKYH 370
>sp|P14075|ENV_HTL1C Env polyprotein precursor [Contains: Surface glycoprotein GP46;
Coat protein GP21 (Transmembrane glycoprotein GP21)]
Length = 488
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 16 LLLALAEQDESAGMINGVTMTANGKQAIDDTDQFLLSQIRMVLKQHEN 159
L+ ALA AG I G A+GK + + D+ + + ++K H+N
Sbjct: 320 LVSALAMGAGVAGRITGSMSLASGKSLLHEVDKDISQLTQAIVKNHKN 367
>sp|Q24742|TRX_DROVI Trithorax protein
Length = 3828
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +1
Query: 25 ALAEQDESAGMINGVTMTANGKQAIDDTDQFLLSQIRMVLKQHENTDANQPTNKQ 189
A + G G+ + ++ DD D F L HE +D+ +P K+
Sbjct: 3310 ASMKNGSGGGAAEGIGQVDDAEEDEDDDDDFSLKMATSACNDHEMSDSEEPAVKE 3364
>sp|P03381|ENV_HTL1A Env polyprotein precursor [Contains: Surface glycoprotein GP46;
Coat protein GP21 (Transmembrane glycoprotein GP21)]
Length = 488
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 16 LLLALAEQDESAGMINGVTMTANGKQAIDDTDQFLLSQIRMVLKQHEN 159
L+ ALA AG I G A+GK + + D+ + + ++K H+N
Sbjct: 320 LVSALAMGAGVAGGITGSMSLASGKSLLHEVDKDISQLTQAIVKNHKN 367
>sp|P23064|ENV_HTL1M Env polyprotein precursor [Contains: Surface glycoprotein GP46;
Coat protein GP21 (Transmembrane glycoprotein GP21)]
Length = 488
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 16 LLLALAEQDESAGMINGVTMTANGKQAIDDTDQFLLSQIRMVLKQHEN 159
L+ ALA AG I G A+GK + + D+ + + ++K H+N
Sbjct: 320 LVSALAMGAGVAGGITGSMSLASGKSLLHEVDKDISQLTQAIVKNHKN 367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,056,777
Number of Sequences: 369166
Number of extensions: 431913
Number of successful extensions: 1646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)