Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H19
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A (T... 456 e-128
sp|O42587|PR6AA_XENLA 26S protease regulatory subunit 6A-A ... 456 e-128
sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A (TAT... 456 e-128
sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A (T... 455 e-128
sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B ... 452 e-127
sp|P46465|PRS6A_ORYSA 26S protease regulatory subunit 6A ho... 434 e-121
sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A ho... 432 e-121
sp|P54776|PRS6A_LYCES 26S protease regulatory subunit 6A ho... 428 e-120
sp|O04019|PRS6A_ARATH 26S protease regulatory subunit 6A ho... 425 e-119
sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A 412 e-115
>sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
(Proteasome subunit P50)
Length = 439
Score = 456 bits (1174), Expect = e-128
Identities = 227/253 (89%), Positives = 243/253 (96%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
IKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKDSYLILE LP E+DSRVKAMEVDERPTE
Sbjct: 124 IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTE 183
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
QYSDIGGLDKQIQEL+EA+VLPM HK++F+ +GIQPPKGVL+YGPPGTGKTLLARACAAQ
Sbjct: 184 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 243
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
TK+TFLKLAGPQLVQMFIGDG+KLVRDAF LAKEKAP+IIFIDELDAIGTKRFDSEKAGD
Sbjct: 244 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGD 303
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGFQPN +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARA
Sbjct: 304 REVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARA 363
Query: 722 RIMQIHSRKMNVA 760
RIMQIHSRKMNV+
Sbjct: 364 RIMQIHSRKMNVS 376
>sp|O42587|PR6AA_XENLA 26S protease regulatory subunit 6A-A (TAT-binding protein 6)
(TBP-6)
Length = 405
Score = 456 bits (1174), Expect = e-128
Identities = 227/253 (89%), Positives = 243/253 (96%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
IKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKDSYLILE LP E+DSRVKAMEVDERPTE
Sbjct: 108 IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTE 167
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
QYSDIGGLDKQIQEL+EA+VLPM HK++F+ +GIQPPKGVL+YGPPGTGKTLLARACAAQ
Sbjct: 168 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 227
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
TK+TFLKLAGPQLVQMFIGDG+KLVRDAF LAKEKAP+IIFIDELDAIGTKRFDSEKAGD
Sbjct: 228 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGD 287
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGFQPN +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARA
Sbjct: 288 REVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARA 347
Query: 722 RIMQIHSRKMNVA 760
RIMQIHSRKMNV+
Sbjct: 348 RIMQIHSRKMNVS 360
>sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
(Spermatogenic cell/sperm-associated TAT-binding protein
homolog SATA)
Length = 439
Score = 456 bits (1174), Expect = e-128
Identities = 227/253 (89%), Positives = 243/253 (96%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
IKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKDSYLILE LP E+DSRVKAMEVDERPTE
Sbjct: 124 IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTE 183
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
QYSDIGGLDKQIQEL+EA+VLPM HK++F+ +GIQPPKGVL+YGPPGTGKTLLARACAAQ
Sbjct: 184 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 243
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
TK+TFLKLAGPQLVQMFIGDG+KLVRDAF LAKEKAP+IIFIDELDAIGTKRFDSEKAGD
Sbjct: 244 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGD 303
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGFQPN +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARA
Sbjct: 304 REVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARA 363
Query: 722 RIMQIHSRKMNVA 760
RIMQIHSRKMNV+
Sbjct: 364 RIMQIHSRKMNVS 376
>sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
Length = 442
Score = 455 bits (1171), Expect = e-128
Identities = 226/253 (89%), Positives = 243/253 (96%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
IKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKDSYLILE LP ++DSRVKAMEVDERPTE
Sbjct: 127 IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTE 186
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
QYSDIGGLDKQIQEL+EA+VLPM HK++F+ +GIQPPKGVL+YGPPGTGKTLLARACAAQ
Sbjct: 187 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 246
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
TK+TFLKLAGPQLVQMFIGDG+KLVRDAF LAKEKAP+IIFIDELDAIGTKRFDSEKAGD
Sbjct: 247 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGD 306
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGFQPN +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARA
Sbjct: 307 REVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARA 366
Query: 722 RIMQIHSRKMNVA 760
RIMQIHSRKMNV+
Sbjct: 367 RIMQIHSRKMNVS 379
>sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B (TAT-binding protein 10)
(TBP-10)
Length = 404
Score = 452 bits (1164), Expect = e-127
Identities = 225/253 (88%), Positives = 241/253 (95%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
IKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKDSYLILE LP E+DSRVKAMEVDERPTE
Sbjct: 89 IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTE 148
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
QYSDIGGLDKQIQEL+EA+VLPM HK++F+ +GIQPPKGVL+YGPPGTGKTLLARACAAQ
Sbjct: 149 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 208
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
TK+TFLKLAGPQLVQMFIGDG+KLVRDAF LAKEKAP+IIFIDELDAIG KRFDSEKAGD
Sbjct: 209 TKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGD 268
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGFQP +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARA
Sbjct: 269 REVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARA 328
Query: 722 RIMQIHSRKMNVA 760
RIMQIHSRKMNV+
Sbjct: 329 RIMQIHSRKMNVS 341
>sp|P46465|PRS6A_ORYSA 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 429
Score = 434 bits (1115), Expect = e-121
Identities = 213/252 (84%), Positives = 238/252 (94%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
+KTSTRQT FLP+IGLV+P +LKPGDLVGVNKDSYLIL+ LP+E+DSRVKAMEVDE+PTE
Sbjct: 114 LKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTE 173
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
Y+DIGGL+KQIQEL+EA+VLPMTHKDRF+ +GI+PPKGVLLYGPPGTGKTL+ARACAAQ
Sbjct: 174 DYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQ 233
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
T +TFLKLAGPQLVQMFIGDG+KLVRDAFQLAKEK+P IIFIDE+DAIGTKRFDSE +GD
Sbjct: 234 TNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGD 293
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGF + IKVIAATNR DILDPAL+RSGRLDRKIEFP P+EEARA
Sbjct: 294 REVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARA 353
Query: 722 RIMQIHSRKMNV 757
RI+QIHSRKMNV
Sbjct: 354 RILQIHSRKMNV 365
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 424
Score = 432 bits (1111), Expect = e-121
Identities = 211/252 (83%), Positives = 237/252 (94%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
+KTSTRQT FLP++GLV+P+ LKPGDLVGVNKDSYLIL+ LP+E+DSRVKAMEVDE+PTE
Sbjct: 109 LKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTE 168
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
Y+DIGGL+KQIQEL+EA+VLPMTHK+RF+ +G++PPKGVLLYGPPGTGKTL+ARACAAQ
Sbjct: 169 DYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 228
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
T +TFLKLAGPQLVQMFIGDG+KLVRDAFQLAKEKAP IIFIDE+DAIGTKRFDSE +GD
Sbjct: 229 TNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGD 288
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGF + IKVIAATNR DILDPAL+RSGRLDRKIEFP P EEARA
Sbjct: 289 REVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARA 348
Query: 722 RIMQIHSRKMNV 757
RI+QIHSRKMNV
Sbjct: 349 RILQIHSRKMNV 360
>sp|P54776|PRS6A_LYCES 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1)
Length = 423
Score = 428 bits (1101), Expect = e-120
Identities = 209/252 (82%), Positives = 236/252 (93%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
+KTSTRQT FLP++GLV+P+ LKPGDLVGVNKDSYLIL+ LP+E+DSRVKAMEVDE+PTE
Sbjct: 108 LKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTE 167
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
Y DIGGL+KQIQEL+EA+VLPMTH++RF+ +G++PPKGVLLYGPPGTGKTL+ARACAAQ
Sbjct: 168 DYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 227
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
T +TFLKLAGPQLVQMFIGDG+KLVRDAFQLAKEK+P IIFIDE+DAIGTKRFDSE +GD
Sbjct: 228 TNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGD 287
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGF + IKVIAATNR DILDPAL+RSGRLDRKIEFP P EEARA
Sbjct: 288 REVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARA 347
Query: 722 RIMQIHSRKMNV 757
RI+QIHSRKMNV
Sbjct: 348 RILQIHSRKMNV 359
>sp|O04019|PRS6A_ARATH 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 419
Score = 425 bits (1092), Expect = e-119
Identities = 208/252 (82%), Positives = 235/252 (93%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
+KTSTRQT FLP++GLV+P+ LKPGDLVGVNKDSYLIL+ LP+E+DSRVKAMEVDE+PTE
Sbjct: 104 LKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTE 163
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
Y+DIGGL+KQIQEL+EA+VLPMTHK++F+ +GI+PPKGVLLYGPPGTGKTL+ARACAAQ
Sbjct: 164 DYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQ 223
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
T +TFLKLAGPQLVQMFIGDG+KLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GD
Sbjct: 224 TNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGD 283
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGF + IKVIAATNR DILDPAL+RSGRLDRKIEFP P EEAR
Sbjct: 284 REVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARG 343
Query: 722 RIMQIHSRKMNV 757
RI+QIHSRKMNV
Sbjct: 344 RILQIHSRKMNV 355
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A
Length = 438
Score = 412 bits (1060), Expect = e-115
Identities = 202/252 (80%), Positives = 229/252 (90%)
Frame = +2
Query: 2 IKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKDSYLILEKLPAEFDSRVKAMEVDERPTE 181
IKTSTRQT FLP+IGLVEP EL PGDL+GVNKDSYLI++KLP+E+DSRVKAMEVDE+PTE
Sbjct: 123 IKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTE 182
Query: 182 QYSDIGGLDKQIQELIEAVVLPMTHKDRFKAIGIQPPKGVLLYGPPGTGKTLLARACAAQ 361
+YSDIGGL KQI+EL EA+VLPM D+F+ +G++PPKG L++GPPGTGKTLLARACAAQ
Sbjct: 183 RYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQ 242
Query: 362 TKSTFLKLAGPQLVQMFIGDGSKLVRDAFQLAKEKAPTIIFIDELDAIGTKRFDSEKAGD 541
+ +TFLKLA PQLVQMFIGDG+KLVRDAF LAKEK+P IIFIDELDAIGTKRFDSEKAGD
Sbjct: 243 SNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGD 302
Query: 542 REVQRTMLELLNQLDGFQPNHDIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEARA 721
REVQRTMLELLNQLDGF + +KVIAATNRVD LDPALLRSGRLDRK+EFP PNEEAR
Sbjct: 303 REVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARV 362
Query: 722 RIMQIHSRKMNV 757
I++IHSRKM +
Sbjct: 363 GILRIHSRKMAI 374
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,003,446
Number of Sequences: 369166
Number of extensions: 1849423
Number of successful extensions: 8813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8489
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)