Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H18
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51826|AFF3_HUMAN AF4/FMR2 family member 3 (LAF-4 protei... 31 0.78
sp|P29148|Npre_PAEPO Bacillolysin precursor (Neutral protease) 31 1.0
sp|P87159|NIF1_SCHPO Mitosis inhibitor nif1 (Nim1 interacti... 29 3.0
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 29 3.9
sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 (Matri... 29 3.9
sp|Q10024|DGKM_CAEEL Putative diacylglycerol kinase K06A1.6... 28 6.6
sp|P57137|FTSY_BUCAI Cell division protein ftsY homolog 28 6.6
sp|O35274|NEB2_RAT Neurabin-2 (Neurabin-II) (Neural tissue-... 28 8.6
sp|P42568|AF9_HUMAN Protein AF-9 (ALL1 fused gene from chro... 28 8.6
sp|Q12468|CSN5_YEAST COP9 signalosome complex subunit 5 28 8.6
>sp|P51826|AFF3_HUMAN AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear protein
related to AF4)
Length = 1227
Score = 31.2 bits (69), Expect = 0.78
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Frame = +2
Query: 77 KDMKKTTCDLLNDDDSSAIKPRAYRSAFSFRLKRSKCDTKINTHCHSKSDELGVANSQ-- 250
K +K CD N+DD IK S RL S +T HC+ + + + ++
Sbjct: 816 KSKRKRKCD--NEDDYREIKKSQGEKDSSSRLATSTSNTLSANHCNMNINSVAIPINKNE 873
Query: 251 -----PLSPGANTAPVSATSHKKRGS---NILHIFTSNRNKTKP 358
P+SP ++ + TS S N +FTS + KP
Sbjct: 874 KMLRSPISPLSDASKHKYTSEDLTSSSRPNGNSLFTSASSSKKP 917
>sp|P29148|Npre_PAEPO Bacillolysin precursor (Neutral protease)
Length = 590
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/121 (23%), Positives = 51/121 (42%)
Frame = +2
Query: 5 SRINCLNTSDSELNKSPDSMSVNAKDMKKTTCDLLNDDDSSAIKPRAYRSAFSFRLKRSK 184
+RI L TSD ++K + S +KD T + N+D + ++ + S
Sbjct: 158 ARIEALPTSDDTISKDAEEPSSVSKD---TYAEAANNDKTLSVD----KDELSLDKASVL 210
Query: 185 CDTKINTHCHSKSDELGVANSQPLSPGANTAPVSATSHKKRGSNILHIFTSNRNKTKPHQ 364
D+KI KS +AN QP P + + +G ++L ++ + N +P
Sbjct: 211 KDSKIEAVEAEKSSIAKIANLQP-----EVDPKAELYYYPKGDDLLLVYVTEVNVLEPAP 265
Query: 365 L 367
L
Sbjct: 266 L 266
>sp|P87159|NIF1_SCHPO Mitosis inhibitor nif1 (Nim1 interacting factor 1)
Length = 681
Score = 29.3 bits (64), Expect = 3.0
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +2
Query: 20 LNTSDSELNKSPDSMSVNAKDMKKTTCDLLNDDDSSAIKPRAYRSAFSFRLKRSKCDTKI 199
LNT+ + LNK + A+ K++ L+ D+ A+K R + R SK + +
Sbjct: 15 LNTTTALLNKKDGNDDDKAEHSKRSGYHGLSPLDALALKHRDLNRKLNLRAMMSKSEDNL 74
Query: 200 ----NTHCHSKSDELGVANSQPLSPGANTAP 280
T S SD L + P SP ++P
Sbjct: 75 QILKETTSGSSSDLLNI--ESPASPAEASSP 103
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
(Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
Length = 1253
Score = 28.9 bits (63), Expect = 3.9
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +2
Query: 14 NCLNTSDS-ELNKSPDSMSVNAKDMKKTTCDLLNDDDSSAIKPRAYRSAFSFRLKRSKCD 190
N ++SDS + + S DS S N D ++ D + DSS + S S + S
Sbjct: 837 NSSDSSDSSDSSDSSDSDSSNRSDSSNSS-DSSDSSDSSNSSDSSDSSDSSDSNESSNSS 895
Query: 191 TKINTHCHSKSDELGVANSQPLSPGANTAPVSATSHKKRGSN 316
++ S SD +NS S +N++ S +S+ SN
Sbjct: 896 DSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSN 937
>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 (Matriptase) (Membrane-type serine
protease 1) (MT-SP1) (Prostamin) (Serine protease
TADG-15) (Tumor associated differentially-expressed
gene-15 protein)
Length = 855
Score = 28.9 bits (63), Expect = 3.9
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +2
Query: 14 NCLNTSDSELNKSPDS---MSVNAKDMKKT--TCDLLNDDDSSAIKPRAYRSAFSFRLKR 178
+C + SD ELN S D+ + K K CD +ND ++ + A +FR
Sbjct: 476 DCTDHSD-ELNCSCDAGHQFTCKNKFCKPLFWVCDSVNDCGDNSDEQGCSCPAQTFRCSN 534
Query: 179 SKCDTKINTHCHSKSDELGVANSQPLSPGANTAPVSATSHKKRGSNILHIFTSN 340
KC +K + C+ K D+ G + + P N V+ T H R N L + N
Sbjct: 535 GKCLSK-SQQCNGK-DDCGDGSDEASCPKVNV--VTCTKHTYRCLNGLCLSKGN 584
>sp|Q10024|DGKM_CAEEL Putative diacylglycerol kinase K06A1.6 (Diglyceride kinase) (DGK)
(DAG kinase)
Length = 937
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +2
Query: 104 LLNDDDSSAIKPRAYRSAFSFRLKRSKCDTKINTHCHSKSDELGVANSQPLSPGANTAPV 283
+ +D+ S + L R + D + NT C+ + ++ G+ ++ PL+ N +
Sbjct: 520 VFSDEPISQLMQAILHETIVTHLDRWRIDVEPNTSCNLEEEDDGMQSALPLTVMTNYFSI 579
Query: 284 SATSH 298
A +H
Sbjct: 580 GADAH 584
>sp|P57137|FTSY_BUCAI Cell division protein ftsY homolog
Length = 378
Score = 28.1 bits (61), Expect = 6.6
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Frame = +2
Query: 5 SRINCLNTSDSELNKSPDSMSVNAKDM-------------KKTTCDLLNDDDSSAIKPRA 145
S+I T D N + + +N +D+ KK D LND K +
Sbjct: 15 SKIKKKKTIDIRQNNTDKNHDINHEDLYTKKDLLIKQDNPKKDEIDTLNDHGKDIEKAQN 74
Query: 146 YRSAFSFRLKRSKCDTKIN 202
++ F RLK+S TK N
Sbjct: 75 TKNNFFLRLKKSLKTTKKN 93
>sp|O35274|NEB2_RAT Neurabin-2 (Neurabin-II) (Neural tissue-specific F-actin binding
protein II) (Protein phosphatase 1 regulatory subunit
9B) (Spinophilin) (p130) (PP1bp134)
Length = 817
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 212 HSKSDELGV-ANSQPLSPGANTAPVSATSHKKRGSNILHI 328
H + E G+ A P +PG + AP A HKK GSN+ I
Sbjct: 19 HRSAYEAGIQALKPPDAPGPDEAP-KAAHHKKYGSNVHRI 57
>sp|P42568|AF9_HUMAN Protein AF-9 (ALL1 fused gene from chromosome 9 protein)
(Myeloid/lymphoid or mixed-lineage leukemia translocated
to chromosome 3 protein)
Length = 568
Score = 27.7 bits (60), Expect = 8.6
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 164 FRLKRSKCDTKINTHCH-SKSDELGVANSQPLSPGANTAPVSATSHKKRGSNILHIFTSN 340
FR K K N H S S ++S S ++++ S++S S+ +S+
Sbjct: 131 FRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
Query: 341 RNKTKPHQLLKQ 376
+ +KPH+L+K+
Sbjct: 191 TSFSKPHKLMKE 202
>sp|Q12468|CSN5_YEAST COP9 signalosome complex subunit 5
Length = 455
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 95 TCDLLNDDDSSAIKPRAYRSAFSFRLKRSKCDTKINTHCHSKSDE 229
T + +DD+S+ F L R+ +TK+N HC + DE
Sbjct: 229 TIESKSDDNSATSYYELETIIFDSELNRALFETKLNLHCVIEDDE 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,602,073
Number of Sequences: 369166
Number of extensions: 744213
Number of successful extensions: 1638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)