Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H16
(354 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 149 2e-36
sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha)... 148 3e-36
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 148 3e-36
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 148 4e-36
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 148 4e-36
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 148 4e-36
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 147 7e-36
sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha) 147 7e-36
sp|P50256|EF1C_PORPU Elongation factor 1-alpha C (EF-1-alpha) 147 7e-36
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 147 1e-35
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 149 bits (376), Expect = 2e-36
Identities = 68/86 (79%), Positives = 79/86 (91%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ LIP+KP+CV
Sbjct: 353 ISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCV 412
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
ETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 ETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha) (Translation elongation
factor 1A) (Eukaryotic elongation factor 1A) (eEF1A)
Length = 458
Score = 148 bits (374), Expect = 3e-36
Identities = 71/86 (82%), Positives = 76/86 (88%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GYSPVLDCHTAHIAC+F ELL+K DRRSGK LED PK KSGDA LVK +PSKPMCV
Sbjct: 351 ISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCV 410
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E FSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 411 EAFSEYPPLGRFAVRDMRQTVAVGVI 436
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 148 bits (374), Expect = 3e-36
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V++IP KPMCV
Sbjct: 353 ISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCV 412
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
ETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 ETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 148 bits (373), Expect = 4e-36
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P KPMCV
Sbjct: 353 ISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCV 412
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 ESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 148 bits (373), Expect = 4e-36
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P KPMCV
Sbjct: 353 ISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCV 412
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 ESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 148 bits (373), Expect = 4e-36
Identities = 69/86 (80%), Positives = 79/86 (91%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GY+PVLDCHTAHIACKFAELL+KIDRRSGK LED PK KSGD+ +VK+IPSKPMCV
Sbjct: 351 IGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCV 410
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 411 EAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 147 bits (371), Expect = 7e-36
Identities = 68/86 (79%), Positives = 79/86 (91%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GYSPVLDCHTAHIAC+F EL++KIDRRSGK +ED PK K+GDA +V++IPSKPMCV
Sbjct: 351 ISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCV 410
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
ETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 411 ETFTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 147 bits (371), Expect = 7e-36
Identities = 68/86 (79%), Positives = 79/86 (91%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
+ +GY+PVLDCHTAHIACKFAELL+KIDRR+GK +E+ PK KSGDA +VK+IPSKPMCV
Sbjct: 352 VGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCV 411
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 412 EAFTEYPPLGRFAVRDMRQTVAVGVI 437
>sp|P50256|EF1C_PORPU Elongation factor 1-alpha C (EF-1-alpha)
Length = 449
Score = 147 bits (371), Expect = 7e-36
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
IH+GY+PVLDCHTAHIACKF+EL+ K+DRRSGK LED PK KSGDA +VK++ SKPMCV
Sbjct: 345 IHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCV 404
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E F+ YPPLGRFAVRDM+QTVAVGVI
Sbjct: 405 EAFTSYPPLGRFAVRDMRQTVAVGVI 430
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 147 bits (370), Expect = 1e-35
Identities = 69/86 (80%), Positives = 78/86 (90%)
Frame = +2
Query: 2 IHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCV 181
I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V++IP KPMCV
Sbjct: 353 ISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCV 412
Query: 182 ETFSEYPPLGRFAVRDMKQTVAVGVI 259
E+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 ESFSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,084,042
Number of Sequences: 369166
Number of extensions: 692130
Number of successful extensions: 2568
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2558
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)