Planarian EST Database


Dr_sW_028_H15

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_H15
         (418 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UN30|SCML1_HUMAN  Sex comb on midleg-like protein 1           31   0.89 
sp|P39770|SALM_DROME  Homeotic protein spalt-major                 30   2.0  
sp|Q8R4U0|STAB2_MOUSE  Stabilin-2 precursor [Contains: Short...    30   2.6  
sp|Q6DE87|CHK1_XENLA  Serine/threonine-protein kinase Chk1 (...    30   2.6  
sp|P36334|SPIKE_CVHOC  Spike glycoprotein precursor (Peplome...    29   3.4  
sp|Q8VSL2|SEPA_SHIFL  Serine protease sepA precursor               28   5.8  
sp|Q84GK0|EATA_ECOLI  Serine protease eatA precursor (Secret...    28   5.8  
sp|P49380|PMA1_KLULA  Plasma membrane ATPase (Proton pump)         28   7.5  
sp|Q91876|MCM7_XENLA  DNA replication licensing factor MCM7 ...    28   7.5  
sp|Q9UIS9|MBD1_HUMAN  Methyl-CpG-binding domain protein 1 (M...    28   9.8  
>sp|Q9UN30|SCML1_HUMAN Sex comb on midleg-like protein 1
          Length = 208

 Score = 31.2 bits (69), Expect = 0.89
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 76  EIDPTLGNVENPFANRDFNVYTCLDKYNNEGINQGFICNFCCGN 207
           E DP L    +P    DF+ + C   Y ++G   G     C GN
Sbjct: 49  EEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLCLGN 92
>sp|P39770|SALM_DROME Homeotic protein spalt-major
          Length = 1365

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
 Frame = +1

Query: 163 EGINQGFICNFCCGNYNFGPEHGH---------RMRCRQCGRVAYSDIEARIYV 297
           +  +QG + N    ++ FG + G          + RCR CG+V  SD   +I++
Sbjct: 417 DSASQGILANSMADDFAFGEKSGEGKGRNEPFFKHRCRYCGKVFGSDSALQIHI 470
>sp|Q8R4U0|STAB2_MOUSE Stabilin-2 precursor [Contains: Short form stabilin-2]
          Length = 2559

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
 Frame = +1

Query: 13  LKMSCSNKPICTYNGPR----FPNPEIDPTLGNVENPFANRDFNVYTCLDKYNNEGIN-- 174
           LK+ C+     T   PR    F  P+ +P  G   NP +        C+D     G    
Sbjct: 718 LKIGCARYCDVTVEIPRCCKGFFGPDCNPCPGGFMNPCSGNG----QCIDGLGGNGTCIC 773

Query: 175 ----QGFICNFCCGNYNFGPEHGHRMRC 246
               QG  C FC     +GP+     +C
Sbjct: 774 EDGFQGSRCQFCSKPNRYGPQCNRTCQC 801
>sp|Q6DE87|CHK1_XENLA Serine/threonine-protein kinase Chk1 (xChk1 protein)
          Length = 474

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 274 LNRQLVHTDDISFYVHVRDQNCSFHNRNCI*ILDLFLHYC 155
           +NR L HT+ + FY H R+ N  +          LFL YC
Sbjct: 58  INRMLSHTNIVRFYGHRREGNIQY----------LFLEYC 87
>sp|P36334|SPIKE_CVHOC Spike glycoprotein precursor (Peplomer protein) (E2) [Contains:
           Spike protein S1 (90B); Spike protein S2 (90A)]
          Length = 1353

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 40  ICTYNGPRFPNPEIDPTLGNVENPFANRDFNVYTCLDKYN 159
           +C YN   +P     P LGN      + D  V +CL K N
Sbjct: 163 VCQYNMCEYPQTICHPNLGNHRKELWHLDTGVVSCLYKRN 202
>sp|Q8VSL2|SEPA_SHIFL Serine protease sepA precursor
          Length = 1364

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 99  ITKSWINFGIWKSWSIIGANWFITTRHF 16
           + K W+  G+  S +  G NW +TT+ F
Sbjct: 277 LQKKWVLIGVLSSGTNYGNNWVVTTQDF 304
>sp|Q84GK0|EATA_ECOLI Serine protease eatA precursor (Secreted autotransporter protein
           eatA) (ETEC autotransporter A)
          Length = 1364

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 99  ITKSWINFGIWKSWSIIGANWFITTRHF 16
           + K W+  G+  S S  G NW +TT+ F
Sbjct: 277 LDKKWVLVGVLSSGSEHGNNWVVTTQDF 304
>sp|P49380|PMA1_KLULA Plasma membrane ATPase (Proton pump)
          Length = 899

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 174 IYSFIIVFIKTSINIEISIGKWIFYITKS 88
           +YS+++  I  S+++EI +G WI  + +S
Sbjct: 669 MYSYVVYRIALSLHLEIFLGLWIAILNRS 697
>sp|Q91876|MCM7_XENLA DNA replication licensing factor MCM7 (CDC47 homolog) (x.MCM7)
          Length = 720

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 304 DRQHKFLPQYLNRQLVHTDDISFYVHVR 221
           D   + LPQY  R++VH D +  Y+  R
Sbjct: 78  DAVQELLPQYKEREVVHKDALDVYIEHR 105
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 (Methyl-CpG binding protein
           MBD1) (Protein containing methyl-CpG-binding domain 1)
          Length = 605

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 187 CNFCCGNYNFGPEHGHRMRC--RQC 255
           C+FCC    FG  +  R +C  RQC
Sbjct: 353 CDFCCDKPKFGGSNQKRQKCRWRQC 377
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,609,227
Number of Sequences: 369166
Number of extensions: 963398
Number of successful extensions: 2435
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)