Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H11
(256 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O46162|SGP1_SCHGR Serine protease inhibitor I/II precurs... 34 0.12
sp|P80060|LCM_LOCMI Protease inhibitors precursor [Contains... 30 1.3
sp|Q02597|POLG_TUMVQ Genome polyprotein [Contains: P1 prote... 30 1.3
sp|P89509|POLG_TUMVJ Genome polyprotein [Contains: P1 prote... 30 1.3
sp|P48374|PARC_NEIGO Topoisomerase IV subunit A 30 1.3
sp|Q00174|LAMA_DROME Laminin alpha chain precursor 30 1.3
sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein ... 30 2.2
sp|O65312|MEDEA_ARATH Polycomb group protein MEDEA (Materna... 29 2.9
sp|P82295|PROML_DROME Prominin-like protein 29 2.9
sp|Q9NZV1|CRIM1_HUMAN Cysteine-rich motor neuron 1 protein ... 29 3.8
>sp|O46162|SGP1_SCHGR Serine protease inhibitor I/II precursor [Contains: Protease
inhibitor SGPI-1 (Schistocerca gregaria trypsin
inhibitor) (SGTI); Protease inhibitor SGPI-2
(Schistocerca gregaria chymotrypsin inhibitor) (SGCI)]
Length = 92
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 68 ETYFDGCNTCFC---GLNACTRMGCPP 139
+T CNTC C G+ ACTR GCPP
Sbjct: 27 QTKKQDCNTCNCTPTGVWACTRKGCPP 53
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = +2
Query: 71 TYFDGCNTCFCGLN----ACTRMGCP 136
T+ D CNTC CG + ACT CP
Sbjct: 65 TFKDKCNTCRCGSDGKSAACTLKACP 90
>sp|P80060|LCM_LOCMI Protease inhibitors precursor [Contains: Protease inhibitor LCMI-I
(PARS intercerebralis major peptide D2) (PMP-D2);
Protease inhibitor LCMI-II (PARS intercerebralis major
peptide C) (PMP-C)]
Length = 92
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +2
Query: 68 ETYFDGCNTCFCGLN----ACTRMGCP 136
+T+ D CNTC CG + ACT CP
Sbjct: 64 KTFKDKCNTCRCGADGKSAACTLKACP 90
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = +2
Query: 86 CNTCFC---GLNACTRMGCPP 139
CNTC C G+ CTR GC P
Sbjct: 33 CNTCTCTPTGVWGCTRKGCQP 53
>sp|Q02597|POLG_TUMVQ Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein
B (NI-b) (NIb) (RNA-directed RNA polymerase); Coat
protein (CP)]
Length = 3163
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -2
Query: 159 CCAVPTNGGQPILVQAFKPQKHVL-----QPSKYVSILSEMHTSDCLTQSPGYSFIS 4
CC V T G P+L + P KH L KY+ L E+ + GY +I+
Sbjct: 654 CCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYID-LPEIEENKMYIAKEGYCYIN 709
>sp|P89509|POLG_TUMVJ Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein
B (NI-b) (NIb) (RNA-directed RNA polymerase); Coat
protein (CP)]
Length = 3164
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -2
Query: 159 CCAVPTNGGQPILVQAFKPQKHVL-----QPSKYVSILSEMHTSDCLTQSPGYSFIS 4
CC V T G P+L + P KH L KY+ L E+ + GY +I+
Sbjct: 654 CCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYID-LPEIEENKMYIAKEGYCYIN 709
>sp|P48374|PARC_NEIGO Topoisomerase IV subunit A
Length = 768
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 189 FIKFRQYSLYCCAVPTNGGQPILVQAFKPQKHVLQPSKYVSILSEMHTSDCLTQSPGYSF 10
FI+ R YS+ +P G + V + ++ +P ++ L E H L+ S GY F
Sbjct: 574 FIRGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHY--LLSSSGGYGF 631
Query: 9 ISK 1
I+K
Sbjct: 632 IAK 634
>sp|Q00174|LAMA_DROME Laminin alpha chain precursor
Length = 3712
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 35 KQSDVCISDNIETYFDGCNTCFCGLNACTRMGCPPFVGTAQ 157
+Q D C D+ + DGC C C GC P G Q
Sbjct: 2044 RQCDRCAVDHWKYEKDGCTPCNCNQGYSRGFGCNPNTGKCQ 2084
>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1048
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 59 DNIETYFDGCNTCFC--GLNACTRMGCP 136
+N E++ DGC C+C G C + CP
Sbjct: 629 ENEESWHDGCRECYCHNGREMCALITCP 656
>sp|O65312|MEDEA_ARATH Polycomb group protein MEDEA (Maternal embryogenesis control
protein) (Protein FERTILIZATION-INDEPENDENT SEED1)
Length = 689
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Frame = +2
Query: 29 CVKQSDVC-----ISDNIETYFDGCNTCFCGLNACTRMGCPPFVGTAQQYKEYCRN 181
C+ + C S + F GCN C + CT CP F + + CR+
Sbjct: 462 CLTHENCCEKYCGCSKDCNNRFGGCN---CAIGQCTNRQCPCFAANRECDPDLCRS 514
>sp|P82295|PROML_DROME Prominin-like protein
Length = 1013
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 86 CNTCFCGLNACTRMGCPPFVGTAQQYKEYC 175
C CFC C R GCPP + +C
Sbjct: 186 CYCCFCCCRRC-RQGCPPCTSKQDAQRRFC 214
>sp|Q9NZV1|CRIM1_HUMAN Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
(Cysteine-rich repeat-containing protein S52)
Length = 1036
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 62 NIETYFDGCNTCFC--GLNACTRMGCP 136
N E++ DGC C+C G C + CP
Sbjct: 618 NEESWHDGCRECYCLNGREMCALITCP 644
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,649,439
Number of Sequences: 369166
Number of extensions: 601807
Number of successful extensions: 1571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 68,354,980
effective HSP length: 55
effective length of database: 58,194,555
effective search space used: 1687642095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)