Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H09
(509 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38652|PGM1_RAT Phosphoglucomutase-1 (Glucose phosphomut... 131 1e-30
sp|Q9VUY9|PGM_DROME Phosphoglucomutase (Glucose phosphomuta... 130 2e-30
sp|Q7KHA1|PGM_DROSI Phosphoglucomutase (Glucose phosphomuta... 130 2e-30
sp|Q9D0F9|PGM1_MOUSE Phosphoglucomutase-1 (Glucose phosphom... 129 3e-30
sp|Q4R5E4|PGM1_MACFA Phosphoglucomutase-1 (Glucose phosphom... 129 5e-30
sp|P36871|PGM1_HUMAN Phosphoglucomutase-1 (Glucose phosphom... 128 9e-30
sp|P00949|PGM1_RABIT Phosphoglucomutase-1 (Glucose phosphom... 127 1e-29
sp|Q9SNX2|PGMC_BROIN Phosphoglucomutase, cytoplasmic (Gluco... 115 6e-26
sp|O49299|PGMC1_ARATH Probable phosphoglucomutase, cytoplas... 114 2e-25
sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precurso... 113 2e-25
>sp|P38652|PGM1_RAT Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 131 bits (329), Expect = 1e-30
Identities = 61/108 (56%), Positives = 85/108 (78%)
Frame = +2
Query: 26 IGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATI 205
+GK F A+ +TV+ ADNF+Y+DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATI
Sbjct: 455 VGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATI 514
Query: 206 RIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
R+YIDSY K+A + +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 515 RLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9VUY9|PGM_DROME Phosphoglucomutase (Glucose phosphomutase) (PGM)
Length = 560
Score = 130 bits (327), Expect = 2e-30
Identities = 63/114 (55%), Positives = 82/114 (71%)
Frame = +2
Query: 8 ISGPGVIGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTG 187
I+ P +GK++ + G + VK ADNF YTDP+D S QG+R++F DGSR++ RLSGTG
Sbjct: 449 ITAPEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTG 508
Query: 188 SSGATIRIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
SSGAT+R+YIDSY K + S V LKPL++I L I Q+ + TGRNAPTVIT
Sbjct: 509 SSGATVRLYIDSYEKENVLGQAS--VMLKPLIDIALEISQLPKFTGRNAPTVIT 560
>sp|Q7KHA1|PGM_DROSI Phosphoglucomutase (Glucose phosphomutase) (PGM)
Length = 560
Score = 130 bits (327), Expect = 2e-30
Identities = 63/114 (55%), Positives = 82/114 (71%)
Frame = +2
Query: 8 ISGPGVIGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTG 187
I+ P +GK++ + G + VK ADNF YTDP+D S QG+R++F DGSR++ RLSGTG
Sbjct: 449 ITAPEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTG 508
Query: 188 SSGATIRIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
SSGAT+R+YIDSY K + S V LKPL++I L I Q+ + TGRNAPTVIT
Sbjct: 509 SSGATVRLYIDSYEKENVLGQAS--VMLKPLIDIALEISQLPKFTGRNAPTVIT 560
>sp|Q9D0F9|PGM1_MOUSE Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 129 bits (325), Expect = 3e-30
Identities = 60/108 (55%), Positives = 84/108 (77%)
Frame = +2
Query: 26 IGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATI 205
+GK F A+ +TV+ ADNF+Y+DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATI
Sbjct: 455 VGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATI 514
Query: 206 RIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
R+YIDSY K+ + +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 515 RLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q4R5E4|PGM1_MACFA Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 129 bits (323), Expect = 5e-30
Identities = 59/108 (54%), Positives = 85/108 (78%)
Frame = +2
Query: 26 IGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATI 205
+GK F A+ +TV+ ADNF+Y+DP+D S ++NQG+R++F+DGSR+I+RLSGTGS+GATI
Sbjct: 455 VGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIIFRLSGTGSAGATI 514
Query: 206 RIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
R+YIDSY K+ + +V L PL+ I L + Q+++ TGR+APTVIT
Sbjct: 515 RLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRSAPTVIT 562
>sp|P36871|PGM1_HUMAN Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 128 bits (321), Expect = 9e-30
Identities = 58/108 (53%), Positives = 84/108 (77%)
Frame = +2
Query: 26 IGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATI 205
+GK F A+ +TV+ ADNF+Y+DP+D S ++NQG+R++F+DGSR+++RLSGTGS+GATI
Sbjct: 455 VGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATI 514
Query: 206 RIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
R+YIDSY K+ + +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 515 RLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|P00949|PGM1_RABIT Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 127 bits (320), Expect = 1e-29
Identities = 60/108 (55%), Positives = 83/108 (76%)
Frame = +2
Query: 26 IGKTFEADGHHFTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATI 205
+GK F A+ +TV+ ADNF+Y DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATI
Sbjct: 455 VGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATI 514
Query: 206 RIYIDSYHKNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
R+YIDSY K+ + +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 515 RLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9SNX2|PGMC_BROIN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM)
Length = 581
Score = 115 bits (288), Expect = 6e-26
Identities = 55/92 (59%), Positives = 72/92 (78%)
Frame = +2
Query: 74 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 253
AD F+YTDP+D S +K+QGIR LF DGSRL++RLSGTGS GATIRIYI+ Y K++
Sbjct: 490 ADEFEYTDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGR 549
Query: 254 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
S AL PLV++ L + +I+++TGR+APTVIT
Sbjct: 550 ESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581
>sp|O49299|PGMC1_ARATH Probable phosphoglucomutase, cytoplasmic 1 (Glucose phosphomutase
1) (PGM 1)
Length = 582
Score = 114 bits (284), Expect = 2e-25
Identities = 54/96 (56%), Positives = 73/96 (76%)
Frame = +2
Query: 62 TVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAE 241
+V AD F+Y DP+D S +K+QGIR LF DGSRL++RLSGTGS GATIR+YI+ Y K+A
Sbjct: 487 SVASADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDAS 546
Query: 242 VAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
S+ AL PLV++ L + ++++ TGR+APTVIT
Sbjct: 547 KTGRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582
>sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM)
Length = 626
Score = 113 bits (283), Expect = 2e-25
Identities = 48/97 (49%), Positives = 73/97 (75%)
Frame = +2
Query: 59 FTVKVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 238
+ ++ AD+F YTDP+D S QG+R +F+DGSR+IYRLSGTGS+GAT+R+YI+ + +
Sbjct: 530 YVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDV 589
Query: 239 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 349
+ +++ALKPL+++ LS+ ++K TGR PTVIT
Sbjct: 590 SKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,066,952
Number of Sequences: 369166
Number of extensions: 1159189
Number of successful extensions: 3172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3164
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)