Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H04
(214 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 154 5e-38
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 154 5e-38
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 154 5e-38
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 154 5e-38
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 154 6e-38
sp|P08537|TBA_XENLA Tubulin alpha chain 154 6e-38
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 154 6e-38
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 154 6e-38
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 154 6e-38
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 154 6e-38
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 154 bits (390), Expect = 5e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 154 bits (390), Expect = 5e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 154 bits (390), Expect = 5e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 154 bits (390), Expect = 5e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 154 bits (389), Expect = 6e-38
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 154 bits (389), Expect = 6e-38
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 154 bits (389), Expect = 6e-38
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 154 bits (389), Expect = 6e-38
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 154 bits (389), Expect = 6e-38
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 154 bits (389), Expect = 6e-38
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +3
Query: 3 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 182
CWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 TGTYRQLFHP 212
TGTYRQLFHP
Sbjct: 80 TGTYRQLFHP 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,869,904
Number of Sequences: 369166
Number of extensions: 493507
Number of successful extensions: 2001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)