Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H03
(264 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37705|GRP3_DAUCA Glycine-rich protein A3 32 0.45
sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid pro... 30 2.2
sp|P06240|LCK_MOUSE Proto-oncogene tyrosine-protein kinase ... 30 2.2
sp|P42774|GBF1_ARATH G-box binding factor 1 (AtbZIP41) 29 2.9
sp|P06239|LCK_HUMAN Proto-oncogene tyrosine-protein kinase ... 29 2.9
sp|Q95KR7|LCK_SAISC Proto-oncogene tyrosine-protein kinase ... 29 2.9
sp|Q5PXS1|LCK_AOTNA Proto-oncogene tyrosine-protein kinase ... 29 2.9
sp|O53426|PRA_MYCTU Proline-rich antigen homolog 29 3.8
sp|P51780|PRIO_TRIVU Major prion protein precursor (PrP) (P... 29 3.8
sp|Q92125|ANXA7_XENLA Annexin A7 (Annexin VII) (Synexin) 29 3.8
>sp|P37705|GRP3_DAUCA Glycine-rich protein A3
Length = 195
Score = 32.0 bits (71), Expect = 0.45
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 164 YPAQGNVYPVPGHVQPGGVYPHGGYAPGVPH 256
YP G YP G+ GG YP GY P H
Sbjct: 57 YPPAGGGYPPQGYPPAGGGYPPQGYPPAGHH 87
Score = 31.2 bits (69), Expect = 0.76
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +2
Query: 164 YPAQGNVYPVPGHVQPGGVYPHGGYAP---GVPHQ 259
YP G YP G+ GG YP GY P G P Q
Sbjct: 45 YPPAGGGYPPQGYPPAGGGYPPQGYPPAGGGYPPQ 79
Score = 30.8 bits (68), Expect = 0.99
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Frame = +2
Query: 152 GGH----MYPAQGNVYPVPGHVQPGGVYPHGGYAP---GVPHQ 259
GGH YP YP G+ GG YP GY P G P Q
Sbjct: 25 GGHYPPGQYPPAAGGYPPQGYPPAGGGYPPQGYPPAGGGYPPQ 67
>sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid protein)
Length = 2716
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 167 PAQGNVYPVPGHVQPGGVYPHGGYAPGVPHQP 262
P Q YP PG+ P YP G YA G P P
Sbjct: 651 PQQPQQYP-PGNYPPRPQYPPGAYATGPPPPP 681
>sp|P06240|LCK_MOUSE Proto-oncogene tyrosine-protein kinase LCK (p56-LCK) (Lymphocyte
cell-specific protein-tyrosine kinase) (LSK)
Length = 509
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 166 SSSGKCLPGSRTCATRRSISPWWLCTW 246
+S G C SR C T++ PWW W
Sbjct: 212 ASDGLCTKLSRPCQTQKPQKPWWEDEW 238
>sp|P42774|GBF1_ARATH G-box binding factor 1 (AtbZIP41)
Length = 315
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 158 HMYPAQGNVYPVPGHVQPGGVYPHGGYAPGVPHQP 262
HM P G P P PG VY H P +P P
Sbjct: 67 HMMPPYGTPVPYPAMYPPGAVYAH----PSMPMPP 97
>sp|P06239|LCK_HUMAN Proto-oncogene tyrosine-protein kinase LCK (p56-LCK) (Lymphocyte
cell-specific protein-tyrosine kinase) (LSK) (T
cell-specific protein-tyrosine kinase)
Length = 509
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 166 SSSGKCLPGSRTCATRRSISPWWLCTW 246
+S G C SR C T++ PWW W
Sbjct: 212 ASDGLCTRLSRPCQTQKPQKPWWEDEW 238
>sp|Q95KR7|LCK_SAISC Proto-oncogene tyrosine-protein kinase LCK (p56-LCK) (Lymphocyte
cell-specific protein-tyrosine kinase)
Length = 509
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 166 SSSGKCLPGSRTCATRRSISPWWLCTW 246
+S G C SR C T++ PWW W
Sbjct: 212 ASDGLCTRLSRPCQTQKPQKPWWEDEW 238
>sp|Q5PXS1|LCK_AOTNA Proto-oncogene tyrosine-protein kinase LCK (p56-LCK) (Lymphocyte
cell-specific protein-tyrosine kinase)
Length = 509
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 166 SSSGKCLPGSRTCATRRSISPWWLCTW 246
+S G C SR C T++ PWW W
Sbjct: 212 ASDGLCTRLSRPCQTQKPQKPWWEDEW 238
>sp|O53426|PRA_MYCTU Proline-rich antigen homolog
Length = 240
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = +2
Query: 167 PAQGNVYPVPGHVQPGGVYP-----HGGYAPGVP 253
P+ G+ YP P GG YP GGYAP P
Sbjct: 43 PSSGSGYPPPPPPPGGGAYPPPPPSAGGYAPPPP 76
>sp|P51780|PRIO_TRIVU Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)
Length = 259
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Frame = +2
Query: 152 GGHMYPAQ-----GNVYPVPGHVQPGGV---YPH-GGYAPGVPH 256
G + YP Q GN YP GH Q GG PH GG G PH
Sbjct: 39 GSNRYPGQPGSPGGNRYPGWGHPQGGGTNWGQPHPGGSNWGQPH 82
>sp|Q92125|ANXA7_XENLA Annexin A7 (Annexin VII) (Synexin)
Length = 512
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +2
Query: 152 GGHMYPAQGNVYPVPGHVQPGGVYPH-------GGYAPGVPHQP 262
GG PA G P PGG YPH GGY G+P P
Sbjct: 41 GGAFPPASGGGNAPP----PGGGYPHAGGYPAPGGYPGGMPSYP 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,486,380
Number of Sequences: 369166
Number of extensions: 510372
Number of successful extensions: 1831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)