Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H01
(765 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZC7|PLEB2_MOUSE Pleckstrin homology domain-containing... 45 3e-04
sp|Q96CS7|PLEB2_HUMAN Pleckstrin homology domain-containing... 44 4e-04
sp|Q9QYE9|PLEB1_MOUSE Pleckstrin homology domain-containing... 38 0.034
sp|Q9WU68|PLEB1_RAT Pleckstrin homology domain-containing p... 38 0.034
sp|Q9UF11|PLEB1_HUMAN Pleckstrin homology domain-containing... 36 0.100
sp|Q14168|MPP2_HUMAN MAGUK p55 subfamily member 2 (MPP2 pro... 31 3.2
>sp|Q9QZC7|PLEB2_MOUSE Pleckstrin homology domain-containing protein family B member 2
(Evectin-2)
Length = 221
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 WTIIYVDGSMSFLKSQDKMSPDKKINLILECKEMKSYDEFES-KIPDGKTRPCLFGF-SN 174
W ++ DG + + Q + S + K+++ ++C +++ E + PDGK R CL
Sbjct: 23 WFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGHECRDIQPPDGKPRDCLLQIVCR 82
Query: 175 SESSYWFCAEDEDDAMVWRLVLE 243
+ CAE DD + W+ L+
Sbjct: 83 DGKTISLCAESTDDCLAWKFTLQ 105
>sp|Q96CS7|PLEB2_HUMAN Pleckstrin homology domain-containing protein family B member 2
(Evectin-2)
Length = 222
Score = 44.3 bits (103), Expect = 4e-04
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 WTIIYVDGSMSFLKSQDKMSPDKKINLILECKEMKSYDEF-ESKIPDGKTRPCLFGF-SN 174
W ++ DG + + Q + + + K+++ ++C +++ E +++ PDGK++ C+
Sbjct: 23 WFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCR 82
Query: 175 SESSYWFCAEDEDDAMVWRLVLE 243
+ CAE DD + W+ L+
Sbjct: 83 DGKTISLCAESTDDCLAWKFTLQ 105
>sp|Q9QYE9|PLEB1_MOUSE Pleckstrin homology domain-containing protein family B member 1
(Pleckstrin homology domain retinal protein 1) (PH
domain containing protein in retina 1) (PHRET1)
Length = 243
Score = 37.7 bits (86), Expect = 0.034
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 WTIIYVDGSMSFLKSQDKMSPDKKINLILECKEMKSYDEFES-KIPDGKTRPCLFGFSNS 177
W +++DG++ + + + ++ + +++K E + + P+G++R L +
Sbjct: 42 WFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLR 101
Query: 178 ESS-YWFCAEDEDDAMVWRLVL 240
E S CAE DDA+ W+ L
Sbjct: 102 EGSRLHLCAETRDDAIAWKTAL 123
>sp|Q9WU68|PLEB1_RAT Pleckstrin homology domain-containing protein family B member 1
(Evectin-1)
Length = 223
Score = 37.7 bits (86), Expect = 0.034
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 WTIIYVDGSMSFLKSQDKMSPDKKINLILECKEMKSYDEFES-KIPDGKTRPCLFGFSNS 177
W +++DG++ + + + ++ + +++K E + + P+G++R L +
Sbjct: 23 WFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLR 82
Query: 178 ESS-YWFCAEDEDDAMVWRLVL 240
E S CAE DDA+ W+ L
Sbjct: 83 EGSRLHLCAETRDDAIAWKTAL 104
>sp|Q9UF11|PLEB1_HUMAN Pleckstrin homology domain-containing protein family B member 1
(Pleckstrin homology domain retinal protein 1) (PH
domain containing protein in retina 1) (PHRET1)
Length = 243
Score = 36.2 bits (82), Expect = 0.100
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 WTIIYVDGSMSFLKSQDKMSPDKKINLILECKEMKSYDE-FESKIPDGKTRPCLFGFSNS 177
W +++DG++ + + + ++ + +++K E + + P+G++R L +
Sbjct: 42 WFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGPECHDVQPPEGRSRDGLLTVNLR 101
Query: 178 ESS-YWFCAEDEDDAMVWRLVL 240
E CAE +DDA+ W+ L
Sbjct: 102 EGGRLHLCAETKDDALAWKTAL 123
>sp|Q14168|MPP2_HUMAN MAGUK p55 subfamily member 2 (MPP2 protein) (Discs large homolog 2)
Length = 576
Score = 31.2 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 140 AKLDLVFLDSLIQSPVIGFVRRMKMMQWF 226
A+LDL+FL +++SP++ + ++ M+ WF
Sbjct: 29 AELDLIFLRGIMESPIVRSLAKVIMVLWF 57
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,044,065
Number of Sequences: 369166
Number of extensions: 1378599
Number of successful extensions: 2798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2798
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)