Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G18
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40239|CD9_FELCA CD9 antigen 42 3e-04
sp|P19075|TSN8_HUMAN Tetraspanin-8 (Tspan-8) (Transmembrane... 42 3e-04
sp|Q8WMQ3|CD9_PIG CD9 antigen 42 3e-04
sp|P30409|CD9_CERAE CD9 antigen (27 kDa diphtheria toxin re... 42 4e-04
sp|P21926|CD9_HUMAN CD9 antigen (p24) (Leukocyte antigen MI... 42 4e-04
sp|P40241|CD9_RAT CD9 antigen 42 4e-04
sp|P30932|CD9_BOVIN CD9 antigen 42 6e-04
sp|Q922J6|TSN2_MOUSE Tetraspanin-2 (Tspan-2) 41 7e-04
sp|P40240|CD9_MOUSE CD9 antigen 41 7e-04
sp|O60636|TSN2_HUMAN Tetraspanin-2 (Tspan-2) 41 0.001
>sp|P40239|CD9_FELCA CD9 antigen
Length = 226
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNM---GADGSAVVIAFYVTMGVGAFT 240
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLAVGLWLRFDSQTKSIFEQDSQPSSFYTGVYILIGAGALM 68
Query: 241 LIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 MLVGFLGCCGAVQES 83
>sp|P19075|TSN8_HUMAN Tetraspanin-8 (Tspan-8) (Transmembrane 4 superfamily member 3)
(Tumor-associated antigen CO-029)
Length = 237
Score = 42.4 bits (98), Expect = 3e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 67 SCIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNM-GAD--GSAVVIAFYVTMGVGAF 237
+CI+ M FNF+F LC + + G++ GS+ +A + + VGA
Sbjct: 6 ACIKYSMFTFNFLFWLCGILILALAIWVRVSNDSQAIFGSEDVGSSSYVAVDILIAVGAI 65
Query: 238 TLIVGACGCCGAYHES 285
+I+G GCCGA ES
Sbjct: 66 IMILGFLGCCGAIKES 81
>sp|Q8WMQ3|CD9_PIG CD9 antigen
Length = 226
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNMGA---DGSAVVIAFYVTMGVGAFT 240
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALM 68
Query: 241 LIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 MVVGFLGCCGAVQES 83
>sp|P30409|CD9_CERAE CD9 antigen (27 kDa diphtheria toxin receptor-associated protein)
(DRAP27)
Length = 228
Score = 42.0 bits (97), Expect = 4e-04
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNM-----GADGSAVVIAFYVTMGVGA 234
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNSSFYTGVYILIGAGA 68
Query: 235 FTLIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 LMMLVGFLGCCGAVQES 85
>sp|P21926|CD9_HUMAN CD9 antigen (p24) (Leukocyte antigen MIC3) (Motility-related
protein) (MRP-1) (Tetraspanin-29) (Tspan-29)
Length = 228
Score = 42.0 bits (97), Expect = 4e-04
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNM-----GADGSAVVIAFYVTMGVGA 234
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNSSFYTGVYILIGAGA 68
Query: 235 FTLIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 LMMLVGFLGCCGAVQES 85
>sp|P40241|CD9_RAT CD9 antigen
Length = 226
Score = 42.0 bits (97), Expect = 4e-04
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNM---GADGSAVVIAFYVTMGVGAFT 240
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNHSSFYTGVYILIGAGALM 68
Query: 241 LIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 MLVGFLGCCGAVQES 83
>sp|P30932|CD9_BOVIN CD9 antigen
Length = 226
Score = 41.6 bits (96), Expect = 6e-04
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNMGA---DGSAVVIAFYVTMGVGAFT 240
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLSVGLWLRFDSQTKSIFEQENNDSSFYTGVYILIGAGALM 68
Query: 241 LIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 MLVGFLGCCGAVQES 83
>sp|Q922J6|TSN2_MOUSE Tetraspanin-2 (Tspan-2)
Length = 221
Score = 41.2 bits (95), Expect = 7e-04
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNMGADGSA---VVIAFYVTMGVGAFT 240
CI+ L++ FN +F L K++ ++ + + YV +G GA
Sbjct: 10 CIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGTMKDLSSEDKSPEYFYVGLYVLVGAGALM 69
Query: 241 LIVGACGCCGAYHES 285
+ VG GCCGA ES
Sbjct: 70 MTVGFFGCCGAMRES 84
>sp|P40240|CD9_MOUSE CD9 antigen
Length = 226
Score = 41.2 bits (95), Expect = 7e-04
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNMGA---DGSAVVIAFYVTMGVGAFT 240
CI+ L+ FNFIF L K++ + S+ Y+ +G GA
Sbjct: 9 CIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNHSSFYTGVYILIGAGALM 68
Query: 241 LIVGACGCCGAYHES 285
++VG GCCGA ES
Sbjct: 69 MLVGFLGCCGAVQES 83
>sp|O60636|TSN2_HUMAN Tetraspanin-2 (Tspan-2)
Length = 221
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 70 CIRILMMIFNFIFVLCXXXXXXXXXXXXXXXXXKNMGADGSA---VVIAFYVTMGVGAFT 240
CI+ L++ FN +F L K + ++ + + YV +G GA
Sbjct: 10 CIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGAIKELSSEDKSPEYFYVGLYVLVGAGALM 69
Query: 241 LIVGACGCCGAYHES 285
+ VG GCCGA ES
Sbjct: 70 MAVGFFGCCGAMRES 84
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,568,821
Number of Sequences: 369166
Number of extensions: 342157
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)