Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G17
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R013|CATF_MOUSE Cathepsin F precursor 120 1e-27
sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 p... 119 3e-27
sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF) 117 8e-27
sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1) 115 3e-26
sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor 91 8e-19
sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor 90 1e-18
sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (... 84 1e-16
sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 precu... 83 2e-16
sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgo... 81 9e-16
sp|P43295|A494_ARATH Probable cysteine proteinase A494 prec... 79 3e-15
>sp|Q9R013|CATF_MOUSE Cathepsin F precursor
Length = 462
Score = 120 bits (300), Expect = 1e-27
Identities = 55/109 (50%), Positives = 71/109 (65%)
Frame = +1
Query: 4 GGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWC 183
GGLPS AY I+ +GGLETE DY Y+ +TC VYIN S + +E +AAW
Sbjct: 313 GGLPSNAYAAIKNLGGLETEDDYGYQGHVQTCNFSAQMAKVYINDSVELSRNENKIAAWL 372
Query: 184 SINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSS 330
+ GPIS+ INAF MQFYR GI+HPF+ C+P +DH VL+VG+ S+
Sbjct: 373 AQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSN 421
>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 precursor
Length = 614
Score = 119 bits (297), Expect = 3e-27
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDS-SETTMAA 177
NGGL AYK I+ +GGLE E++YPYKA + C +++ V + G + +ET M
Sbjct: 457 NGGLMDNAYKAIKDIGGLEYEAEYPYKAKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQE 516
Query: 178 WCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTT 324
W NGPISIGINA AMQFYRGG+SHP+K C+ +LDHGVL+VG+ +
Sbjct: 517 WLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVS 565
>sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF)
Length = 484
Score = 117 bits (293), Expect = 8e-27
Identities = 54/108 (50%), Positives = 69/108 (63%)
Frame = +1
Query: 4 GGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWC 183
GGLPS AY I+ +GGLETE DY Y+ ++C K VYIN S + +E +AAW
Sbjct: 335 GGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWL 394
Query: 184 SINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTS 327
+ GPIS+ INAF MQFYR GIS P + C+P +DH VL+VG+ S
Sbjct: 395 AKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRS 442
>sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1)
Length = 319
Score = 115 bits (288), Expect = 3e-26
Identities = 55/108 (50%), Positives = 72/108 (66%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAW 180
NGGLPS AY+ I +MGGL E +YPY A + C L +AVYIN S ++ ET +AAW
Sbjct: 168 NGGLPSNAYESIIKMGGLMLEDNYPYDAKNEKCHLKTDGVAVYINSSVNLTQDETELAAW 227
Query: 181 CSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTT 324
N IS+G+NA +QFY+ GISHP+ IFC+ LDH VL+VG+ +
Sbjct: 228 LYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVS 275
>sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor
Length = 371
Score = 90.9 bits (224), Expect = 8e-19
Identities = 47/108 (43%), Positives = 64/108 (59%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAW 180
NGGL + A+ +Q+ GGLE+E DYPY C DKSKI + + E ++A
Sbjct: 209 NGGLMTTAFSYLQKAGGLESEKDYPYTGSDGKCKFDKSKIVASVQNFSVVSVDEAQISAN 268
Query: 181 CSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTT 324
+GP++IGINA MQ Y GG+S P+ C HLDHGVL+VG+ +
Sbjct: 269 LIKHGPLAIGINAAYMQTYIGGVSCPY--ICG-RHLDHGVLLVGYGAS 313
>sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor
Length = 343
Score = 90.1 bits (222), Expect = 1e-18
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKADRKT-CMLDKSKIAVYINGSESIDSSETTMAA 177
NGGL AY I + GG++TES YPY A+ T C + + I I+ I +ET MA
Sbjct: 191 NGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAG 250
Query: 178 WCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSS 330
+ GP++I +A QFY GG+ F I CNP+ LDHG+LIVG++ ++
Sbjct: 251 YIVSTGPLAIAADAVEWQFYIGGV---FDIPCNPNSLDHGILIVGYSAKNT 298
>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (RD19)
Length = 368
Score = 83.6 bits (205), Expect = 1e-16
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKA-DRKTCMLDKSKIAVYINGSESIDSSETTMAA 177
NGGL + A++ + GGL E DYPY D KTC LDKSKI ++ I E +AA
Sbjct: 207 NGGLMNSAFEYTLKTGGLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAA 266
Query: 178 WCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGF 315
NGP+++ INA MQ Y GG+S P+ C L+HGVL+VG+
Sbjct: 267 NLVKNGPLAVAINAGYMQTYIGGVSCPY--ICT-RRLNHGVLLVGY 309
>sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 precursor
Length = 321
Score = 83.2 bits (204), Expect = 2e-16
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Frame = +1
Query: 4 GGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWC 183
GG + A+ I+ GG++TES YPY+A+ ++C D + I GS + +E +
Sbjct: 172 GGWMTSAFDYIKDNGGIDTESSYPYEAEDRSCRFDANSIGAICTGSVEVQHTEEALQEAV 231
Query: 184 SINGPISIGINA--FAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSS 330
S GPIS+ I+A F+ QFY G+ ++ C+P LDHGVL VG+ T S+
Sbjct: 232 SGVGPISVAIDASHFSFQFYSSGVY--YEQNCSPTFLDHGVLAVGYGTEST 280
>sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgor-responsive protein 15A)
Length = 363
Score = 80.9 bits (198), Expect = 9e-16
Identities = 41/105 (39%), Positives = 59/105 (56%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAW 180
NGGL + A++ + + GG+ E DY Y +C DKSK+ ++ + E +AA
Sbjct: 204 NGGLMNNAFEYLLESGGVVQEKDYAYTGRDGSCKFDKSKVVASVSNFSVVTLDEDQIAAN 263
Query: 181 CSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGF 315
NGP+++ INA MQ Y G+S P+ C LDHGVL+VGF
Sbjct: 264 LVKNGPLAVAINAAWMQTYMSGVSCPY--VCAKSRLDHGVLLVGF 306
>sp|P43295|A494_ARATH Probable cysteine proteinase A494 precursor
Length = 361
Score = 79.3 bits (194), Expect = 3e-15
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Frame = +1
Query: 1 NGGLPSQAYKVIQQMGGLETESDYPYKA-DRKTCMLDKSKIAVYINGSESIDSSETTMAA 177
NGGL + A++ + GGL E DYPY D +C LD+SKI ++ + +E +AA
Sbjct: 204 NGGLMNSAFEYTLKTGGLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAA 263
Query: 178 WCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNT 321
NGP+++ INA MQ Y GG+S P+ C+ L+HGVL+VG+ +
Sbjct: 264 NLIKNGPLAVAINAAYMQTYIGGVSCPY--ICS-RRLNHGVLLVGYGS 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,431,925
Number of Sequences: 369166
Number of extensions: 663522
Number of successful extensions: 1588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)